From e501ff54c97a4f027cb94dad18efddf541e4c65e Mon Sep 17 00:00:00 2001 From: Blaise Li <blaise.li__git@nsup.org> Date: Fri, 4 Feb 2022 16:35:30 +0100 Subject: [PATCH] Update mentions of genome preparation workflow. Also made the genome preparation repository a submodule. --- .gitmodules | 3 +++ README.md | 2 +- genome_preparation | 1 + 3 files changed, 5 insertions(+), 1 deletion(-) create mode 160000 genome_preparation diff --git a/.gitmodules b/.gitmodules index 43dedf0..4720464 100644 --- a/.gitmodules +++ b/.gitmodules @@ -34,3 +34,6 @@ path = bam25prime url = https://bioinfo_utils:UTSWyWVPdw_kbxWR7-zD@gitlab.pasteur.fr/bli/bam25prime.git update = merge +[submodule "genome_preparation"] + path = genome_preparation + url = git@gitlab.pasteur.fr:bli/genome_preparation.git diff --git a/README.md b/README.md index fab8e61..4d4c818 100644 --- a/README.md +++ b/README.md @@ -95,7 +95,7 @@ same way as described in the previous section. ### Genome preparation A genome preparation workflow is available at -<https://gitlab.pasteur.fr/bli/10825_Cecere/-/tree/master/Genomes> +<https://gitlab.pasteur.fr/bli/genome_preparation> This workflow will download genomic data from Illumina's iGenomes repository as well as data regarding repeated elements directly from UCSC. diff --git a/genome_preparation b/genome_preparation new file mode 160000 index 0000000..ad8d2cd --- /dev/null +++ b/genome_preparation @@ -0,0 +1 @@ +Subproject commit ad8d2cd7ce865ccc5ce4ee8a8d35813d7de702cc -- GitLab