diff --git a/.gitmodules b/.gitmodules index ac0bbc487c904c18d8908122de6d6b0ae8f5b9f9..b381cff4a3c63ee162ee4f62d489a7b6f9e371e8 100644 --- a/.gitmodules +++ b/.gitmodules @@ -42,4 +42,4 @@ url = git@gitlab.pasteur.fr:bli/gtf2attr.git [submodule "libbamutils"] path = libbamutils - url = https://gitlab.pasteur.fr/bli/libbamutils.git + url = git@gitlab.pasteur.fr:bli/libbamutils.git diff --git a/RNA_Seq_Cecere/RNA-seq.snakefile b/RNA_Seq_Cecere/RNA-seq.snakefile index 429e66af5fd602482d5b825afbf1c4cd3731bb14..663e409dfd42ed6f0e879025c81bd71afa3176cd 100644 --- a/RNA_Seq_Cecere/RNA-seq.snakefile +++ b/RNA_Seq_Cecere/RNA-seq.snakefile @@ -1678,6 +1678,11 @@ rule test_size_factor: "Got ValueError:", f"{str(e)}", f"Data cannot be plotted for {normalizer}", f"{data}\n"])) + elif str(e) == "array must not contain infs or NaNs": + warn("\n".join([ + "Got ValueError:", f"{str(e)}", + f"Data cannot be plotted for {normalizer}", + f"{data}\n"])) else: raise # xlabel = "log10(normalized counts)"