1. 09 May, 2018 1 commit
  2. 24 Apr, 2018 1 commit
  3. 12 Apr, 2018 1 commit
  4. 23 Mar, 2018 1 commit
  5. 12 Mar, 2018 1 commit
  6. 08 Mar, 2018 1 commit
  7. 05 Mar, 2018 1 commit
  8. 28 Feb, 2018 1 commit
  9. 21 Feb, 2018 1 commit
  10. 08 Feb, 2018 1 commit
  11. 22 Jan, 2018 1 commit
  12. 16 Jan, 2018 1 commit
  13. 12 Jan, 2018 1 commit
  14. 18 Dec, 2017 2 commits
  15. 14 Dec, 2017 1 commit
  16. 12 Dec, 2017 1 commit
    • Blaise Li's avatar
      Folder rearrangement. · 17bfe0b6
      Blaise Li authored
      For RNA-seq and GRO-seq, log and data directories are now subdirectories
      of output directories. local_annot_dir also moves as subdirectory of
      GRO-seq output.
      17bfe0b6
  17. 08 Dec, 2017 1 commit
  18. 06 Dec, 2017 4 commits
  19. 20 Oct, 2017 1 commit
  20. 17 Oct, 2017 1 commit
  21. 15 Sep, 2017 1 commit
  22. 12 Sep, 2017 1 commit
  23. 11 Sep, 2017 1 commit
  24. 07 Sep, 2017 1 commit
  25. 06 Sep, 2017 1 commit
  26. 09 Aug, 2017 1 commit
  27. 28 Jul, 2017 1 commit
  28. 27 Jul, 2017 1 commit
  29. 26 Jul, 2017 1 commit
  30. 24 Jul, 2017 2 commits
  31. 21 Jul, 2017 2 commits
  32. 17 Jul, 2017 1 commit
  33. 06 Jul, 2017 1 commit
    • Blaise Li's avatar
      Added DESeq2 analyses an bigwig file generation. · 27b7b692
      Blaise Li authored
      The normalization for the bigwig files is currently based on
      reads forward-mapping on protein-coding genes.
      
      Bigwig file generation uses a new method implemented in bam2bigwig.sh
      which is faster than bamCoverage from deeptools. It generates slightly
      different results (see c5bbd282) and
      has not been tested for compatibility with further deeptools-based
      analyses..
      27b7b692
  34. 29 Jun, 2017 1 commit