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requirements.txt 605 B
pysam
pyBigWig
scikit-learn
matplotlib
pandas
seaborn
husl
rpy2
libdeseq @ git+https://bioinfo_utils:uqiFbzWyBtzxYn7br82P@gitlab.pasteur.fr/bli/libdeseq.git
libhts @ git+https://bioinfo_utils:DP-sqNot8AdsMek_KJiC@gitlab.pasteur.fr/bli/libhts.git
libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git
snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git
# extra dependencies for some rules
libcelegans @ git+https://bioinfo_utils:izoZHUvhFJU8689hqM5u@gitlab.pasteur.fr/bli/libcelegans.git
deeptools