From 3af441597fb15d183dfe38229284fa0273c6f080 Mon Sep 17 00:00:00 2001 From: Blaise Li <blaise.li__git@nsup.org> Date: Tue, 25 Oct 2022 13:04:48 +0200 Subject: [PATCH] Dependency coherence. libhts has been updated, and depends on libbamutils, so libbamutils has to require the updated version of libhts. --- libbamutils/__init__.py | 4 ++-- setup.py | 3 ++- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/libbamutils/__init__.py b/libbamutils/__init__.py index f3dfbd3..2a989a1 100644 --- a/libbamutils/__init__.py +++ b/libbamutils/__init__.py @@ -1,6 +1,6 @@ -__copyright__ = "Copyright (C) 2020 Blaise Li" +__copyright__ = "Copyright (C) 2020-2022 Blaise Li" __licence__ = "GNU GPLv3" -__version__ = 0.12 +__version__ = "0.12.1" from .libbamutils import ( BamFile, BedFile, filter_read_size, diff --git a/setup.py b/setup.py index deb5b77..d92eab6 100644 --- a/setup.py +++ b/setup.py @@ -21,7 +21,8 @@ setup( install_requires=[ "bam25prime @ git+https://gitlab.pasteur.fr/bli/bam25prime.git@ec4aaa5b1add2733c74eaeb9bb881034e702a916", "cytoolz", - "libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@5ac2b62e23a1b28f54d1ce2a483c8df082dfbebc", + # Be careful: libhts depends on libbamutils + "libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@36d33ac2c366c0f0702ab50fdcab37261add7b9c", "libreads @ git+https://gitlab.pasteur.fr/bli/libreads.git@91db379cd379f8f12fccdd3840d4369b7f09d444"]) #ext_modules = cythonize("libsmallrna/libsmallrna.pyx"), #install_requires=["cytoolz"], -- GitLab