requirements.txt

Cython
libbamutils @ git+https://gitlab.pasteur.fr/bli/libbamutils.git@a63cb65c3a078b6a5802a74df541da22bbc71c5c
libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git@b29b854ff1db6c87386007808286207b8af11b9d
matplotlib
networkx
numpy
pandas
pyBigWig
# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518
# pybedtools
# scipy<=1.3.3
scipy>=1.4.2
seaborn