setup.py 832 Bytes
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from setuptools import setup, find_packages
#from Cython.Build import cythonize

name = "libhts"

# Adapted from Biopython
__version__ = "Undefined"
for line in open("%s/__init__.py" % name):
    if (line.startswith('__version__')):
        exec(line.strip())


setup(
    name=name,
    version=__version__,
    description="Miscellaneous things to process high throughput sequencing data.",
    author="Blaise Li",
    author_email="blaise.li@normalesup.org",
    license="MIT",
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    packages=find_packages(),
    install_requires=[
        # "libworkflows",
        "matplotlib",
        "networkx",
        "numpy",
        "pandas",
        "pyBigWig",
        "pybedtools",
        "scipy",
        "seaborn"])
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    #ext_modules = cythonize("libsmallrna/libsmallrna.pyx"),
    #install_requires=["cytoolz"],
    #zip_safe=False