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Blaise LI
libhts
Commits
084f5022
Commit
084f5022
authored
Mar 06, 2018
by
Blaise Li
Browse files
Fixing tex issues in some plots.
parent
ba8352b8
Changes
1
Hide whitespace changes
Inline
Side-by-side
libhts/libhts.py
View file @
084f5022
from
functools
import
reduce
from
re
import
sub
import
warnings
...
...
@@ -323,6 +324,10 @@ def plot_norm_correlations(correlations):
#correlations.plot.kde(ax=ax1)
#sns.violinplot(data=correlations, orient="h", ax=ax2)
#ax2.set_xlabel("Pearson correlation coefficient")
usetex
=
mpl
.
rcParams
.
get
(
"text.usetex"
,
False
)
if
usetex
:
correlations
.
columns
=
[
sub
(
"_"
,
"\_"
,
colname
)
for
colname
in
correlations
.
columns
]
axis
=
sns
.
violinplot
(
data
=
correlations
,
cut
=
0
)
axis
.
set_ylabel
(
"Pearson correlation coefficient"
)
...
...
@@ -332,6 +337,10 @@ def plot_counts_distribution(data, xlabel):
#axis = data.plot.kde(legend=None)
#axis.set_xlabel(xlabel)
#axis.legend(ncol=len(REPS))
usetex
=
mpl
.
rcParams
.
get
(
"text.usetex"
,
False
)
if
usetex
:
xlabel
=
sub
(
"_"
,
r
"\_"
,
xlabel
)
data
.
columns
=
[
sub
(
"_"
,
"\_"
,
colname
)
for
colname
in
data
.
columns
]
try
:
axis
=
data
.
plot
.
kde
()
except
ValueError
as
e
:
...
...
@@ -346,6 +355,10 @@ def plot_counts_distribution(data, xlabel):
def
plot_boxplots
(
data
,
ylabel
):
fig
=
plt
.
figure
(
figsize
=
(
6
,
12
))
axis
=
fig
.
add_subplot
(
111
)
usetex
=
mpl
.
rcParams
.
get
(
"text.usetex"
,
False
)
if
usetex
:
ylabel
=
sub
(
"_"
,
r
"\_"
,
ylabel
)
data
.
columns
=
[
sub
(
"_"
,
"\_"
,
colname
)
for
colname
in
data
.
columns
]
data
.
plot
.
box
(
ax
=
axis
)
axis
.
set_ylabel
(
ylabel
)
for
label
in
axis
.
get_xticklabels
():
...
...
@@ -411,6 +424,9 @@ def plot_lfc_distribution(res, contrast, fold_type=None):
fold_type
=
"log2FoldChange"
lfc
=
getattr
(
res
,
fold_type
).
dropna
()
lfc
.
name
=
contrast
usetex
=
mpl
.
rcParams
.
get
(
"text.usetex"
,
False
)
if
usetex
:
lfc
.
columns
=
[
sub
(
"_"
,
"\_"
,
colname
)
for
colname
in
lfc
.
columns
]
axis
=
sns
.
kdeplot
(
lfc
)
axis
.
set_xlabel
(
fold_type
)
axis
.
set_ylabel
(
"frequency"
)
...
...
@@ -561,6 +577,10 @@ def plot_paired_scatters(data, columns=None, hue=None, log_log=False):
"""Alternative to pairplot, in order to avoid histograms on the diagonal."""
if
columns
is
None
:
columns
=
data
.
columns
usetex
=
mpl
.
rcParams
.
get
(
"text.usetex"
,
False
)
if
usetex
:
data
.
columns
=
[
sub
(
"_"
,
"\_"
,
colname
)
for
colname
in
data
.
columns
]
columns
=
[
sub
(
"_"
,
"\_"
,
colname
)
for
colname
in
columns
]
g
=
sns
.
PairGrid
(
data
,
vars
=
columns
,
hue
=
hue
,
size
=
8
)
#g.map_offdiag(plt.scatter, marker=".")
g
.
map_lower
(
plt
.
scatter
,
marker
=
"."
)
...
...
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