From 2f362a38b407f980718b61ac36c26afd41441504 Mon Sep 17 00:00:00 2001 From: Blaise Li <blaise.li__git@nsup.org> Date: Fri, 13 Dec 2019 16:02:01 +0100 Subject: [PATCH] Newer PyBigwig cannot both read and write. --- libhts/libhts.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/libhts/libhts.py b/libhts/libhts.py index b4bfc47..959b1a8 100644 --- a/libhts/libhts.py +++ b/libhts/libhts.py @@ -210,7 +210,8 @@ def make_empty_bigwig(filename, chrom_sizes): """ bw_out = pyBigWig.open(filename, "w") bw_out.addHeader(list(chrom_sizes.items())) - for (chrom, chrom_len) in bw_out.chroms().items(): + # for (chrom, chrom_len) in bw_out.chroms().items(): + for (chrom, chrom_len) in chrom_sizes.items(): bw_out.addEntries( chrom, 0, values=np.nan_to_num(np.zeros(chrom_len)[0::10]), -- GitLab