diff --git a/setup.py b/setup.py
index 512701d4dc3f0c2d08d5672b1dc71579f207dfc3..caea281408e4bdc4cafc24f2d53bc2da8674894c 100644
--- a/setup.py
+++ b/setup.py
@@ -28,8 +28,8 @@ setup(
         "numpy",
         "pandas",
         "pyBigWig",
-        "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers",
-        # "pybedtools",
+        # "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers",
+        "pybedtools",
         "scipy",
         "seaborn"],
     # specific versions and index would rather belong to requirements.txt