Commit 7f9e31de authored by Blaise Li's avatar Blaise Li

Mention bam2bigwig.sh and citation in README.

parent 7e9e2ed2
# Miscellaneous things to process high throughput sequencing data.
This Python package also installs a shell script depending on samtools:
`sam2indexedbam.sh`
This Python package also installs some shell scripts:
* `sam2indexedbam.sh` (depends on samtools)
* `bam2bigwig.sh` (depends on bedops, python3, samtools, bedtools, niceload from parallel and bedGraphToBigWig from UCSC-tools)
## Installing
......@@ -11,3 +14,9 @@ It might also work directly:
python3 -m pip install git+ssh://git@gitlab.pasteur.fr/bli/libhts.git
## Citing
If you use this package, please cite the following paper:
> Barucci et al, 2020 (doi: [10.1038/s41556-020-0462-7](https://doi.org/10.1038/s41556-020-0462-7))
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment