diff --git a/scripts/sam2indexedbam.sh b/scripts/sam2indexedbam.sh index a530f7db106557594fe779439620cab2f35f6fc1..99d82b7e911294f2428829068664ea9c19209294 100755 --- a/scripts/sam2indexedbam.sh +++ b/scripts/sam2indexedbam.sh @@ -31,6 +31,7 @@ function error_exit samtools --version SAM=${1} +echo "Will sort and index ${SAM}" case ${SAM} in *.sam)