diff --git a/install.sh b/install.sh index 06391fd37fa40be9ba4b7a5383739e17087a11a5..5ddc41a80e7fe6839786c8be3efa902015bc1b2a 100755 --- a/install.sh +++ b/install.sh @@ -1,5 +1,5 @@ #!/bin/sh python3.6 setup.py build_ext # .egg-link does not work with PYTHONPATH ? -pip3.6 install -e . -pip3.6 install --no-deps --ignore-installed . +python3.6 -m pip install -e . +python3.6 -m pip install --no-deps --ignore-installed . diff --git a/libhts/libhts.py b/libhts/libhts.py index 5b4e1b03193b10f9797cc1120ee65cfd3fa97c48..4e633984a07a2bc0f9d6f6daf8c0cbe9c3fc7959 100644 --- a/libhts/libhts.py +++ b/libhts/libhts.py @@ -139,7 +139,7 @@ def gtf_2_genes_exon_lengths(gtf_filename): def repeat_bed_2_lengths(repeat_bed): - """Computes the lengths of repeatitive elements in a bed file, grouped by families. + """Computes the lengths of repetitive elements in a bed file, grouped by families. This assumes that the elements have their names composed of the family name, then a colon, then a number. For instance: Simple_repeat|Simple_repeat|(TTTTTTG)n:1