diff --git a/requirements.txt b/requirements.txt index a90f7b36406ef11dc417e5a82c27544d787ecb08..4f50c1007ebc9873875798bcc46f912fca2eef25 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,13 +1,13 @@ Cython -libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git +libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git matplotlib networkx numpy pandas pyBigWig # pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize" -pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518 -# pybedtools +# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518 +pybedtools # scipy<=1.3.3 scipy>=1.4.2 seaborn diff --git a/setup.py b/setup.py index a447a3041a1fdb59c17d7f7fa68c5a950c82af63..71b957e93b1674b2c3ddff57a06a1d15de926f8a 100644 --- a/setup.py +++ b/setup.py @@ -38,14 +38,15 @@ setup( install_requires=[ #"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git@744dd79b579577cb6e131653260d7990946be3ad#egg=libworkflows-0.1", #"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git#egg=libworkflows-0.1", - "libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git", + #"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git", + "libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git", "matplotlib", "networkx", "numpy", "pandas", "pyBigWig", - "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518", - # "pybedtools", + # "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518", + "pybedtools", # "scipy<=1.3.3", "scipy>=1.4.2", "seaborn"],