From b0f9dc005a8cd90b4ae92f5151a91f99eef7bb07 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Wed, 9 Dec 2020 11:59:13 +0100
Subject: [PATCH] Simpler dependencies.
---
requirements.txt | 6 +++---
setup.py | 7 ++++---
2 files changed, 7 insertions(+), 6 deletions(-)
diff --git a/requirements.txt b/requirements.txt
index a90f7b3..4f50c10 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,13 +1,13 @@
Cython
-libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git
+libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git
matplotlib
networkx
numpy
pandas
pyBigWig
# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
-pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518
-# pybedtools
+# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518
+pybedtools
# scipy<=1.3.3
scipy>=1.4.2
seaborn
diff --git a/setup.py b/setup.py
index a447a30..71b957e 100644
--- a/setup.py
+++ b/setup.py
@@ -38,14 +38,15 @@ setup(
install_requires=[
#"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git@744dd79b579577cb6e131653260d7990946be3ad#egg=libworkflows-0.1",
#"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git#egg=libworkflows-0.1",
- "libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git",
+ #"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git",
+ "libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git",
"matplotlib",
"networkx",
"numpy",
"pandas",
"pyBigWig",
- "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518",
- # "pybedtools",
+ # "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518",
+ "pybedtools",
# "scipy<=1.3.3",
"scipy>=1.4.2",
"seaborn"],
--
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