diff --git a/scripts/bam2bigwig.sh b/scripts/bam2bigwig.sh index cd7a7d63c649a12030bd9ea8497e76121b5bd998..a02fbb644cf22539ebca1e26a8548751299bd83c 100755 --- a/scripts/bam2bigwig.sh +++ b/scripts/bam2bigwig.sh @@ -35,12 +35,18 @@ load_tools () { - command -v || module load bedops/2.4.36 - command -v || module load Python/3.7.2 + command -v bedmap || module load bedops/2.4.36 + # command -v bedmap || module load bedops/2.4.37 + command -v python3 || module load Python/3.7.2 + # command -v python3 || module load Python/3.8.1 command -v samtools || module load samtools/1.9 + # command -v samtools || module load samtools/1.10 command -v bedtools || module load bedtools/2.25.0 + # command -v bedtools || module load bedtools/2.29.2 command -v niceload || module load parallel/20170122 + # command -v niceload || module load parallel/20200222 command -v bedGraphToBigWig || module load UCSC-tools/v373 + # command -v bedGraphToBigWig || module load UCSC-tools/v390 } workdir=$(mktemp -d)