From b13207c06f1bee1aabfe355f8d4da4c0d2852d17 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Tue, 8 Sep 2020 10:15:44 +0200
Subject: [PATCH] Prepare adaptation to newer cluster.
---
scripts/bam2bigwig.sh | 10 ++++++++--
1 file changed, 8 insertions(+), 2 deletions(-)
diff --git a/scripts/bam2bigwig.sh b/scripts/bam2bigwig.sh
index cd7a7d6..a02fbb6 100755
--- a/scripts/bam2bigwig.sh
+++ b/scripts/bam2bigwig.sh
@@ -35,12 +35,18 @@
load_tools ()
{
- command -v || module load bedops/2.4.36
- command -v || module load Python/3.7.2
+ command -v bedmap || module load bedops/2.4.36
+ # command -v bedmap || module load bedops/2.4.37
+ command -v python3 || module load Python/3.7.2
+ # command -v python3 || module load Python/3.8.1
command -v samtools || module load samtools/1.9
+ # command -v samtools || module load samtools/1.10
command -v bedtools || module load bedtools/2.25.0
+ # command -v bedtools || module load bedtools/2.29.2
command -v niceload || module load parallel/20170122
+ # command -v niceload || module load parallel/20200222
command -v bedGraphToBigWig || module load UCSC-tools/v373
+ # command -v bedGraphToBigWig || module load UCSC-tools/v390
}
workdir=$(mktemp -d)
--
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