From b5c33ec861fc3cb3138be004b71de239ea263e66 Mon Sep 17 00:00:00 2001 From: Blaise Li Date: Thu, 12 Mar 2020 19:25:50 +0100 Subject: [PATCH] Further fixing test of existence. --- scripts/bam2bigwig.sh | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/scripts/bam2bigwig.sh b/scripts/bam2bigwig.sh index 35436ba..6c1b909 100755 --- a/scripts/bam2bigwig.sh +++ b/scripts/bam2bigwig.sh @@ -36,12 +36,12 @@ load_tools () { - bedops --version 2> /dev/null || module load bedops/2.4.36 - python3 -V 2> /dev/null || module load Python/3.7.2 - samtools --version 2> /dev/null || module load samtools/1.9 - bedtools --version 2> /dev/null || module load bedtools/2.25.0 - niceload --version 2> /dev/null || module load parallel/20170122 - bedGraphToBigWig 2> /dev/null || module load UCSC-tools/v373 + command -v || module load bedops/2.4.36 + command -v || module load Python/3.7.2 + command -v samtools || module load samtools/1.9 + command -v bedtools || module load bedtools/2.25.0 + command -v niceload || module load parallel/20170122 + command -v bedGraphToBigWig || module load UCSC-tools/v373 } workdir=$(mktemp -d) -- GitLab