From ba8352b80ac8564d0c464676a1367684e6fd2a32 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Mon, 5 Mar 2018 16:53:42 +0100
Subject: [PATCH] Testing usage of tex formatting.
---
libhts/libhts.py | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/libhts/libhts.py b/libhts/libhts.py
index 45b9f6e..b7fcf2f 100644
--- a/libhts/libhts.py
+++ b/libhts/libhts.py
@@ -15,7 +15,20 @@ import pandas as pd
from scipy.stats.stats import pearsonr, linregress
# To compute geometric mean
from scipy.stats.mstats import gmean
+import matplotlib as mpl
import matplotlib.pyplot as plt
+# https://stackoverflow.com/a/42768093/1878788
+from matplotlib.backends.backend_pgf import FigureCanvasPgf
+mpl.backend_bases.register_backend('pdf', FigureCanvasPgf)
+TEX_PARAMS = {
+ "text.usetex": True, # use LaTeX to write all text
+ "pgf.rcfonts": False, # Ignore Matplotlibrc
+ "pgf.texsystem": "lualatex", # hoping to avoid memory issues
+ "pgf.preamble": [
+ r'\usepackage{color}' # xcolor for colours
+ ]
+}
+mpl.rcParams.update(TEX_PARAMS)
import seaborn as sns
from rpy2.robjects import r, pandas2ri, Formula, StrVector
as_df = r("as.data.frame")
@@ -476,6 +489,7 @@ def plot_scatter(data,
y_range=None,
axes_style=None):
fig, ax = plt.subplots()
+ # ax.set_adjustable('box')
# First plot the data in grey
data.plot.scatter(
x=x_column, y=y_column,
--
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