diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..4699b522768c9f0c7a16d9e89e7cd9073e63562c --- /dev/null +++ b/README.md @@ -0,0 +1,13 @@ +# Miscellaneous things to process high throughput sequencing data. + +This Python package also installs a shell script depending on samtools: +`sam2indexedbam.sh` + +## Installing + +Get the source using `git clone git@gitlab.pasteur.fr:bli/libhts.git`, `cd` into it and run `python3 -m pip install .` + +It might also work directly: + + python3 -m pip install git+ssh://git@gitlab.pasteur.fr/bli/libhts.git +