From c74efa0f3331a1c0cde298b4766fbe560b39148d Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Wed, 5 Jun 2019 19:35:07 +0200
Subject: [PATCH] Added README with install instructions.

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 README.md | 13 +++++++++++++
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+# Miscellaneous things to process high throughput sequencing data.
+
+This Python package also installs a shell script depending on samtools:
+`sam2indexedbam.sh`
+
+## Installing
+
+Get the source using `git clone git@gitlab.pasteur.fr:bli/libhts.git`, `cd` into it and run `python3 -m pip install .`
+
+It might also work directly:
+
+    python3 -m pip install git+ssh://git@gitlab.pasteur.fr/bli/libhts.git
+
-- 
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