From e0d627032a22c34ecd6b3a2f5c6865187a4e057b Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Fri, 30 Apr 2021 12:14:49 +0200
Subject: [PATCH] Update libbamutils dependency.
There seems to be a circular dependency issue: updating libhts
downgraded libbamutils, but libbamutils needs newer libhts.
---
requirements.txt | 2 +-
setup.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/requirements.txt b/requirements.txt
index 8236876..4e7a93d 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,5 +1,5 @@
Cython
-libbamutils @ git+https://gitlab.pasteur.fr/bli/libbamutils.git@a63cb65c3a078b6a5802a74df541da22bbc71c5c
+libbamutils @ git+https://gitlab.pasteur.fr/bli/libbamutils.git@92433c830ede5d3e95dcc8f9415073187897b9f5
libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git@b29b854ff1db6c87386007808286207b8af11b9d
matplotlib
networkx
diff --git a/setup.py b/setup.py
index d3d6680..cadd215 100644
--- a/setup.py
+++ b/setup.py
@@ -38,7 +38,7 @@ setup(
"scripts/copypaste_bigwig_regions.py",
"scripts/extract_annot_start.py"],
install_requires=[
- "libbamutils @ git+https://gitlab.pasteur.fr/bli/libbamutils.git@a63cb65c3a078b6a5802a74df541da22bbc71c5c",
+ "libbamutils @ git+https://gitlab.pasteur.fr/bli/libbamutils.git@92433c830ede5d3e95dcc8f9415073187897b9f5",
#"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git@744dd79b579577cb6e131653260d7990946be3ad#egg=libworkflows-0.1",
#"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git#egg=libworkflows-0.1",
#"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git",
--
GitLab