From e2deadec42e7eb8a61d083c99cc6e7a7728de5e6 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Wed, 22 Jan 2020 15:12:52 +0100
Subject: [PATCH] Using main pybedtools.
---
requirements.txt | 3 ++-
setup.py | 3 ++-
2 files changed, 4 insertions(+), 2 deletions(-)
diff --git a/requirements.txt b/requirements.txt
index 3c0e82b..4f038f0 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -5,6 +5,7 @@ networkx
numpy
pandas
pyBigWig
-pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
+# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
+pybedtools
scipy
seaborn
diff --git a/setup.py b/setup.py
index 14c4e75..caea281 100644
--- a/setup.py
+++ b/setup.py
@@ -28,7 +28,8 @@ setup(
"numpy",
"pandas",
"pyBigWig",
- "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers",
+ # "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers",
+ "pybedtools",
"scipy",
"seaborn"],
# specific versions and index would rather belong to requirements.txt
--
GitLab