Commit fbbe4ad3 authored by Blaise Li's avatar Blaise Li

Using auto-cythonizing pybedtools.

parent 6666fe7b
...@@ -5,7 +5,8 @@ networkx ...@@ -5,7 +5,8 @@ networkx
numpy numpy
pandas pandas
pyBigWig pyBigWig
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize" # pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@auto_cythonize
# pybedtools # pybedtools
scipy scipy
seaborn seaborn
...@@ -28,7 +28,7 @@ setup( ...@@ -28,7 +28,7 @@ setup(
"numpy", "numpy",
"pandas", "pandas",
"pyBigWig", "pyBigWig",
"pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers", "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@auto_cythonize",
# "pybedtools", # "pybedtools",
"scipy", "scipy",
"seaborn"], "seaborn"],
......
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