Commits · 1e70541708ddc03fc8747958efb72268cc29c5a2 · Blaise LI / libhts

11 Feb, 2021 1 commit
- BamFile changed methods name. · 1e705417
  Blaise Li authored Feb 11, 2021
  
  1e705417
05 Jan, 2021 1 commit
- Script to extract reads from bam from bed regions. · 2f357ca8
  Blaise Li authored Jan 05, 2021
  
  2f357ca8
17 Dec, 2020 1 commit
- Gene-list filtering in extract_annot_start.py. · 56cfa04d
  Blaise Li authored Dec 17, 2020
```
Also have setup.py install the script.
```
  56cfa04d
10 Dec, 2020 2 commits
- No egg here. · 09d8dd85
  Blaise Li authored Dec 10, 2020
  
  09d8dd85
- Trying to avoid pseudo-conflicts with new pip. · a7dbdd88
  Blaise Li authored Dec 10, 2020
  
  a7dbdd88
09 Dec, 2020 2 commits
- Revert to using unofficial pybedtools. · 86b49bd8
  Blaise Li authored Dec 09, 2020
  
  86b49bd8
- Simpler dependencies. · b0f9dc00
  Blaise Li authored Dec 09, 2020
  
  b0f9dc00
02 Jul, 2020 1 commit
- Change dependency to scipy. · 1c0ae101
  Blaise Li authored Jul 02, 2020
```
Now needs 1.4.2 or above.
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  1c0ae101
29 Apr, 2020 2 commits
- Constrain scipy version. · 79c3d0aa
  Blaise Li authored Apr 29, 2020
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Later will have to enable 1.4.2.
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  79c3d0aa
- Add script to copy and paste bigwig regions. · 7c79f77a
  Blaise Li authored Apr 29, 2020
  
  7c79f77a
24 Feb, 2020 2 commits
- Coherent licence info. · 4441fea3
  Blaise Li authored Feb 24, 2020
  
  4441fea3
- Add licence. · b8ad92ec
  Blaise Li authored Feb 24, 2020
  
  b8ad92ec
27 Jan, 2020 3 commits
- Using pep518-aware pybedtools. · c4715fde
  Blaise Li authored Jan 27, 2020
  
  c4715fde
- Using auto-cythonizing pybedtools. · fbbe4ad3
  Blaise Li authored Jan 27, 2020
  
  fbbe4ad3
- Back to custom pybedtools. · 6666fe7b
  Blaise Li authored Jan 27, 2020
  
  6666fe7b
22 Jan, 2020 3 commits
- Revert "Back to custom pybedtools." · 3bf44740
  Blaise Li authored Jan 22, 2020
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This reverts commit 2b8a5ee6.
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  3bf44740
- Back to custom pybedtools. · 2b8a5ee6
  Blaise Li authored Jan 22, 2020
  
  2b8a5ee6
- Using main pybedtools. · e2deadec
  Blaise Li authored Jan 22, 2020
  
  e2deadec
04 Nov, 2019 1 commit
- Just a comment. · 571fae24
  Blaise Li authored Nov 04, 2019
  
  571fae24
29 Oct, 2019 1 commit
- Avoid having a broken pybedtools installation. · 3ca1b698
  Blaise Li authored Oct 29, 2019
```
This could "compete" with the fixed one, and cause missing headers
issues.
```
  3ca1b698
07 Jun, 2019 1 commit
- Added bam2bigwig.sh to scripts. · 53b52ea7
  Blaise Li authored Jun 07, 2019
```
The script is taken from bioinfo_utils.
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  53b52ea7
22 May, 2019 1 commit
- Package sam2indexedbam.sh with libhts. · 6267d53a
  Blaise Li authored May 22, 2019
  
  6267d53a
13 May, 2019 1 commit
- Adding version and dependencies. · fae7b5db
  Blaise Li authored May 13, 2019
  
  fae7b5db
01 Feb, 2019 1 commit
- List dependencies for libhts. · fcfaae6c
  Blaise Li authored Feb 01, 2019
  
  fcfaae6c
27 Jun, 2017 1 commit
- Correct bed sort, moved stuff to libs and wrappers · 460fe53f
  Blaise Li authored Jun 27, 2017
  
  460fe53f