Commits · e0d627032a22c34ecd6b3a2f5c6865187a4e057b · Blaise LI / libhts

30 Apr, 2021 1 commit

Update libbamutils dependency. · e0d62703

Blaise Li authored Apr 30, 2021

There seems to be a circular dependency issue: updating libhts
downgraded libbamutils, but libbamutils needs newer libhts.

e0d62703

11 Feb, 2021 1 commit
- BamFile changed methods name. · 1e705417
  Blaise Li authored Feb 11, 2021
  
  1e705417
05 Jan, 2021 1 commit
- Script to extract reads from bam from bed regions. · 2f357ca8
  Blaise Li authored Jan 05, 2021
  
  2f357ca8
10 Dec, 2020 2 commits
- No egg here. · 09d8dd85
  Blaise Li authored Dec 10, 2020
  
  09d8dd85
- Trying to avoid pseudo-conflicts with new pip. · a7dbdd88
  Blaise Li authored Dec 10, 2020
  
  a7dbdd88
09 Dec, 2020 2 commits
- Revert to using unofficial pybedtools. · 86b49bd8
  Blaise Li authored Dec 09, 2020
  
  86b49bd8
- Simpler dependencies. · b0f9dc00
  Blaise Li authored Dec 09, 2020
  
  b0f9dc00
02 Jul, 2020 1 commit
- Change dependency to scipy. · 1c0ae101
  Blaise Li authored Jul 02, 2020
```
Now needs 1.4.2 or above.
```
  1c0ae101
29 Apr, 2020 1 commit
- Constrain scipy version. · 79c3d0aa
  Blaise Li authored Apr 29, 2020
```
Later will have to enable 1.4.2.
```
  79c3d0aa
24 Feb, 2020 1 commit
- Update used token. · 75c46489
  Blaise Li authored Feb 24, 2020
  
  75c46489
27 Jan, 2020 3 commits
- Using pep518-aware pybedtools. · c4715fde
  Blaise Li authored Jan 27, 2020
  
  c4715fde
- Using auto-cythonizing pybedtools. · fbbe4ad3
  Blaise Li authored Jan 27, 2020
  
  fbbe4ad3
- Back to custom pybedtools. · 6666fe7b
  Blaise Li authored Jan 27, 2020
  
  6666fe7b
22 Jan, 2020 3 commits
- Trying normal pybedtools just for libhts. · acafaa97
  Blaise Li authored Jan 22, 2020
  
  acafaa97
- Back to custom pybedtools. · 2b8a5ee6
  Blaise Li authored Jan 22, 2020
  
  2b8a5ee6
- Using main pybedtools. · e2deadec
  Blaise Li authored Jan 22, 2020
  
  e2deadec
29 Oct, 2019 1 commit
- Adding requirements.txt · 2afd8597
  Blaise Li authored Oct 29, 2019
  
  2afd8597