- 22 Jan, 2020 1 commit
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Blaise Li authored
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- 13 Dec, 2019 1 commit
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Blaise Li authored
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- 04 Nov, 2019 2 commits
- 29 Oct, 2019 2 commits
- 21 Oct, 2019 2 commits
- 16 Sep, 2019 1 commit
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Blaise Li authored
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- 17 Jul, 2019 1 commit
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Blaise Li authored
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- 16 Jul, 2019 1 commit
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Blaise Li authored
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- 09 Jul, 2019 1 commit
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Blaise Li authored
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- 07 Jun, 2019 1 commit
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Blaise Li authored
The script is taken from bioinfo_utils.
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- 05 Jun, 2019 2 commits
- 22 May, 2019 1 commit
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Blaise Li authored
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- 13 May, 2019 1 commit
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Blaise Li authored
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- 15 Mar, 2019 1 commit
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Blaise Li authored
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- 01 Feb, 2019 1 commit
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Blaise Li authored
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- 20 Dec, 2018 1 commit
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Blaise Li authored
Depending on pip version, `pip3.6` sometimes fail with "ImportError: cannot import name 'main'". Using `python3.6 -m pip` instead avoids this.
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- 15 Nov, 2018 1 commit
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Blaise Li authored
This is not yet fully tested, and may have effects on other pipelines.
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- 04 Oct, 2018 1 commit
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Blaise Li authored
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- 06 Sep, 2018 1 commit
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Blaise Li authored
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- 03 Sep, 2018 1 commit
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Blaise Li authored
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- 10 Aug, 2018 1 commit
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Blaise Li authored
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- 09 Aug, 2018 1 commit
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Blaise Li authored
It needs a list of identifiers and an annotation file, and generates a pybedtools.BedTool.
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- 22 Jun, 2018 1 commit
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Blaise Li authored
Added function to compute seed disposition from bowtie2 settings.
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- 04 Jun, 2018 1 commit
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Blaise Li authored
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- 01 Jun, 2018 1 commit
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Blaise Li authored
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- 25 Apr, 2018 1 commit
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Blaise Li authored
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- 11 Apr, 2018 1 commit
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Blaise Li authored
Also removed some debugging output that was written in a unique file in /tmp, which prevented the small RNA annotation to be performed by a new user without erasing this file.
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- 16 Mar, 2018 1 commit
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Blaise Li authored
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- 08 Mar, 2018 3 commits
- 06 Mar, 2018 1 commit
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Blaise Li authored
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- 05 Mar, 2018 1 commit
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Blaise Li authored
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- 22 Feb, 2018 1 commit
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Blaise Li authored
Also made scatterplot axes style more configurable.
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- 30 Jan, 2018 1 commit
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Blaise Li authored
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- 22 Jan, 2018 1 commit
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Blaise Li authored
Made paired scatterplot plotting function part of libhts as `plot_paired_scatters`. Modifications in small RNA-seq pipeline not tested.
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