Commits · master · Blaise LI / libhts

27 Jul, 2020 1 commit
- Avoid deprecation warning. · 3e835227
  Blaise Li authored Jul 27, 2020
```
Changed .ix to .loc
```
  3e835227
08 Jul, 2020 1 commit
- Update test for empty DataFrame. · b13393e1
  Blaise Li authored Jul 08, 2020
  
  b13393e1
02 Jul, 2020 1 commit
- Change dependency to scipy. · 1c0ae101
  Blaise Li authored Jul 02, 2020
```
Now needs 1.4.2 or above.
```
  1c0ae101
29 Apr, 2020 6 commits
- Constrain scipy version. · 79c3d0aa
  Blaise Li authored Apr 29, 2020
```
Later will have to enable 1.4.2.
```
  79c3d0aa
- Nicer message. · 39d96816
  Blaise Li authored Apr 29, 2020
  
  39d96816
- Fixing message. · 28de1679
  Blaise Li authored Apr 29, 2020
  
  28de1679
- Adding progression messages. · 2e675cd6
  Blaise Li authored Apr 29, 2020
  
  2e675cd6
- Specify default "mode" argument for numpy.pad. · b5d98f70
  Blaise Li authored Apr 29, 2020
```
It has no default value for older numpy version.
```
  b5d98f70
- Add script to copy and paste bigwig regions. · 7c79f77a
  Blaise Li authored Apr 29, 2020
  
  7c79f77a
24 Mar, 2020 2 commits
- Linting. · cde7fc33
  Blaise Li authored Mar 24, 2020
  
  cde7fc33
- Make slurm-compatible script. · 66415b36
  Blaise Li authored Mar 24, 2020
  
  66415b36
12 Mar, 2020 2 commits
- Further fixing test of existence. · b5c33ec8
  Blaise Li authored Mar 12, 2020
  
  b5c33ec8
- Fix tests in bash. · 89ca9ae9
  Blaise Li authored Mar 12, 2020
  
  89ca9ae9
24 Feb, 2020 6 commits
- Update used token. · 75c46489
  Blaise Li authored Feb 24, 2020
  
  75c46489
- Coherent licence info. · 4441fea3
  Blaise Li authored Feb 24, 2020
  
  4441fea3
- Mention bam2bigwig.sh and citation in README. · 7f9e31de
  Blaise Li authored Feb 24, 2020
  
  7f9e31de
- Fix auto-module-load for Python 3. · 7e9e2ed2
  Blaise Li authored Feb 24, 2020
  
  7e9e2ed2
- Merge branch 'master' of gitlab.pasteur.fr:bli/libhts · 0fdf3851
  Blaise Li authored Feb 24, 2020
  
  0fdf3851
- Add licence. · b8ad92ec
  Blaise Li authored Feb 24, 2020
  
  b8ad92ec
06 Feb, 2020 1 commit
- Auto load modules in bam2bigwig.sh · 4eb4b3b8
  Blaise Li authored Feb 06, 2020
  
  4eb4b3b8
27 Jan, 2020 3 commits
- Using pep518-aware pybedtools. · c4715fde
  Blaise Li authored Jan 27, 2020
  
  c4715fde
- Using auto-cythonizing pybedtools. · fbbe4ad3
  Blaise Li authored Jan 27, 2020
  
  fbbe4ad3
- Back to custom pybedtools. · 6666fe7b
  Blaise Li authored Jan 27, 2020
  
  6666fe7b
22 Jan, 2020 4 commits
- Revert "Back to custom pybedtools." · 3bf44740
  Blaise Li authored Jan 22, 2020
```
This reverts commit 2b8a5ee6.
```
  3bf44740
- Trying normal pybedtools just for libhts. · acafaa97
  Blaise Li authored Jan 22, 2020
  
  acafaa97
- Back to custom pybedtools. · 2b8a5ee6
  Blaise Li authored Jan 22, 2020
  
  2b8a5ee6
- Using main pybedtools. · e2deadec
  Blaise Li authored Jan 22, 2020
  
  e2deadec
13 Dec, 2019 1 commit
- Newer PyBigwig cannot both read and write. · 2f362a38
  Blaise Li authored Dec 13, 2019
  
  2f362a38
04 Nov, 2019 2 commits
- Merge branch 'master' of gitlab.pasteur.fr:bli/libhts · 1e3695f8
  Blaise Li authored Nov 04, 2019
  
  1e3695f8
- Just a comment. · 571fae24
  Blaise Li authored Nov 04, 2019
  
  571fae24
29 Oct, 2019 2 commits
- Adding requirements.txt · 2afd8597
  Blaise Li authored Oct 29, 2019
  
  2afd8597
- Avoid having a broken pybedtools installation. · 3ca1b698
  Blaise Li authored Oct 29, 2019
```
This could "compete" with the fixed one, and cause missing headers
issues.
```
  3ca1b698
21 Oct, 2019 2 commits
- Merge branch 'master' of gitlab.pasteur.fr:bli/libhts · 86b1e42f
  Blaise Li authored Oct 21, 2019
  
  86b1e42f
- More verbosity. · 917c8984
  Blaise Li authored Oct 21, 2019
  
  917c8984
16 Sep, 2019 1 commit
- More generic install script. · 57aeede6
  Blaise Li authored Sep 16, 2019
  
  57aeede6
17 Jul, 2019 1 commit
- More robust bam2bigwig.sh, increment version. · bc6758c1
  Blaise Li authored Jul 17, 2019
  
  bc6758c1
16 Jul, 2019 1 commit
- Fix empty BedTool: need to pass file name, not fh. · 1843ade5
  Blaise Li authored Jul 16, 2019
  
  1843ade5
09 Jul, 2019 1 commit
- Unset use of LaTeX, fix read type examination. · 519923a0
  Blaise Li authored Jul 09, 2019
  
  519923a0
07 Jun, 2019 1 commit
- Added bam2bigwig.sh to scripts. · 53b52ea7
  Blaise Li authored Jun 07, 2019
```
The script is taken from bioinfo_utils.
```
  53b52ea7
05 Jun, 2019 1 commit
- Added README with install instructions. · c74efa0f
  Blaise Li authored Jun 05, 2019
  
  c74efa0f