From b56cb3c431b1ed955069a77e29c43be9183f9868 Mon Sep 17 00:00:00 2001 From: Blaise Li <blaise.li__git@nsup.org> Date: Fri, 18 Oct 2019 17:56:32 +0200 Subject: [PATCH] PEP 518 build isolation fails. Cython and pysam have to be installed beforehand. https://github.com/pypa/setuptools/issues/1405#issuecomment-409663455 --- install.sh | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/install.sh b/install.sh index 5531f69..27c0ad1 100755 --- a/install.sh +++ b/install.sh @@ -1,5 +1,6 @@ #!/bin/sh /usr/bin/env python3 setup.py build_ext # .egg-link does not work with PYTHONPATH ? -/usr/bin/env python3 -m pip install -e . -/usr/bin/env python3 -m pip install --no-deps --ignore-installed . +# https://github.com/pypa/setuptools/issues/1405#issuecomment-409663455 +/usr/bin/env python3 -m pip install --no-build-isolation -e . +/usr/bin/env python3 -m pip install --no-build-isolation --no-deps --ignore-installed . -- GitLab