Miscellaneous utilities for snakemake workflows.

This package contains utilities I use in my snakemake workflows.

Installing

Get the source using git clone git@gitlab.pasteur.fr:bli/libworkflows.git, cd into it and run python3 -m pip install .

It might also work directly:

python3 -m pip install git+ssh://git@gitlab.pasteur.fr/bli/libworkflows.git

Citing

If you use this package, please cite the following paper:

Barucci et al, 2020 (doi: 10.1038/s41556-020-0462-7)