diff --git a/create_metagene_profile.py b/create_metagene_profile.py index 795d51606ed04bb95a4c28d54fc6d7363812364e..f3578c591198276525721c7bb0dadb514deada5c 100755 --- a/create_metagene_profile.py +++ b/create_metagene_profile.py @@ -82,7 +82,7 @@ warnings.formatwarning = formatwarning def open_feature_db(db_filename, annot_filename=None, force_new=False, **kwd_args): """ - Open a :class:`gffutil.FeatureDB` stored as *db_filename*. + Open a :class:`gffutils.FeatureDB` stored as *db_filename*. If *annot_filename* is provided, it can be used to create *db_filename* in case this file does not exist. @@ -173,7 +173,7 @@ def feature2bed(feature): def bedfile_from_gene_list(fdb, genes): """Create a temporary bed file for the merged transcripts corresponding - to gene ids listed in *genes*, and using the :class:`gffutil.FeatureDB` + to gene ids listed in *genes*, and using the :class:`gffutils.FeatureDB` *fdb* The name of the bed file is returned. After using it, it should be deleted using os.unlink(bedfile_name)"""