diff --git a/requirements.txt b/requirements.txt
index f53f61ac0c14e97c21fe4b2c9ad7bb3a402cd472..a9ddf11c58134b82694a36dd0af884b157abd339 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,7 +1,7 @@
 cytoolz
 deeptools
 gffutils
-libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@09d8dd85807c983d2b60cc362966db756250aa18
+libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@c6820e38561007a87359bffe59a4a0cb2cd3f9ec
 libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git@b29b854ff1db6c87386007808286207b8af11b9d
 matplotlib
 pandas
diff --git a/setup.py b/setup.py
index 9126825d8e00faf31e1f5255696ed55291df6093..3522fc89345a7b9626edf65184f5367ce2d2a075 100644
--- a/setup.py
+++ b/setup.py
@@ -35,7 +35,7 @@ setup(
         "cytoolz",
         "deeptools",
         "gffutils",
-        "libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@09d8dd85807c983d2b60cc362966db756250aa18",
+        "libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@c6820e38561007a87359bffe59a4a0cb2cd3f9ec",
         "libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git@b29b854ff1db6c87386007808286207b8af11b9d",
         "matplotlib",
         "pandas"],