diff --git a/scripts/create_metagene_profile.py b/scripts/create_metagene_profile.py index 6e95ce41d61690b3f449e0e6d15faec0c56084ea..7b56569f6a8895b9e62f5ececa29ce9b8d670997 100755 --- a/scripts/create_metagene_profile.py +++ b/scripts/create_metagene_profile.py @@ -77,7 +77,7 @@ from tempfile import NamedTemporaryFile from collections import defaultdict # from itertools import chain from sqlite3 import OperationalError -from yaml import load as yload +from yaml import safe_load as yload # https://pythonhosted.org/gffutils/ from gffutils import FeatureDB, create_db # from deeptools import heatmapper @@ -254,7 +254,7 @@ PARAMETER_INFO = "\n".join(DEFAULT_PARAMETERS.keys()) # **extra_parameters): # """Combine information from bigwig files *bigwig_filenames* and bed file # *bed_filename*. -# +# # If *plot_filename* is set, write the corresponding meta profile # in this file. # """ @@ -279,7 +279,7 @@ PARAMETER_INFO = "\n".join(DEFAULT_PARAMETERS.keys()) # val = [None] * nb_samples # hm_params[key] = val # heatm.parameters = hm_params -# +# # if plot_filename is not None: # print(f"plotting profile to {plot_filename}") # prof_params = keyfilter(is_prof_param, parameters)