From bf22a459a69ee8f6f14037a95725aa7f1bb2df56 Mon Sep 17 00:00:00 2001 From: Blaise Li <blaise.li__git@nsup.org> Date: Thu, 20 May 2021 12:21:43 +0200 Subject: [PATCH] Use safe_load for yaml files. --- scripts/create_metagene_profile.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/scripts/create_metagene_profile.py b/scripts/create_metagene_profile.py index 6e95ce4..7b56569 100755 --- a/scripts/create_metagene_profile.py +++ b/scripts/create_metagene_profile.py @@ -77,7 +77,7 @@ from tempfile import NamedTemporaryFile from collections import defaultdict # from itertools import chain from sqlite3 import OperationalError -from yaml import load as yload +from yaml import safe_load as yload # https://pythonhosted.org/gffutils/ from gffutils import FeatureDB, create_db # from deeptools import heatmapper @@ -254,7 +254,7 @@ PARAMETER_INFO = "\n".join(DEFAULT_PARAMETERS.keys()) # **extra_parameters): # """Combine information from bigwig files *bigwig_filenames* and bed file # *bed_filename*. -# +# # If *plot_filename* is set, write the corresponding meta profile # in this file. # """ @@ -279,7 +279,7 @@ PARAMETER_INFO = "\n".join(DEFAULT_PARAMETERS.keys()) # val = [None] * nb_samples # hm_params[key] = val # heatm.parameters = hm_params -# +# # if plot_filename is not None: # print(f"plotting profile to {plot_filename}") # prof_params = keyfilter(is_prof_param, parameters) -- GitLab