diff --git a/smwrappers/map_on_genome/wrapper.py b/smwrappers/map_on_genome/wrapper.py index dbe9a9184fd706966f69a83f5a06653441edc39c..61270ab71a6278d3b1b51e4c96719634b7db5d68 100644 --- a/smwrappers/map_on_genome/wrapper.py +++ b/smwrappers/map_on_genome/wrapper.py @@ -53,8 +53,8 @@ shell(mapping_command(snakemake.params.aligner)) if hasattr(snakemake.output, "methods"): shell(f"cp {snakemake.input.methods} {snakemake.output.methods}") - methods = f"The {params.read_name} were mapped on the {params.genome_name} using {aligner} (version ${{{{v}}}}) with options {snakemake.params.settings}" + methods = f"The {snakemake.params.read_name} were mapped on the {snakemake.params.genome_name} using {snakemake.params.aligner} (version ${{{{v}}}}) with options {snakemake.params.settings}" shell(f""" - v=$({aligner} --version | head -1 | awk '{{print $3}}') + v=$({snakemake.params.aligner} --version | head -1 | awk '{{print $3}}') echo "{methods}" >> {snakemake.output.methods} """)