diff --git a/setup.py b/setup.py index a260f9680126d456e9da08979bc640aaa3f312dc..a27143af3cf912cd5e3b676b02b7e223ebbc4327 100644 --- a/setup.py +++ b/setup.py @@ -2,7 +2,7 @@ from setuptools import setup, find_packages setup( name="snakemake_wrappers", - version=0.2, + version=0.3, description="Snakemake wrappers and rules that can be included in snakemake workflows.", author="Blaise Li", author_email="blaise.li@normalesup.org", @@ -10,5 +10,5 @@ setup( packages=find_packages(), package_data={ "smincludes": ["*.rules"], - "wrappers": ["*/wrapper.py"]}, + "smwrappers": ["*/wrapper.py"]}, ) diff --git a/wrappers/__init__.py b/smwrappers/__init__.py similarity index 100% rename from wrappers/__init__.py rename to smwrappers/__init__.py diff --git a/wrappers/bam2fastq/wrapper.py b/smwrappers/bam2fastq/wrapper.py similarity index 100% rename from wrappers/bam2fastq/wrapper.py rename to smwrappers/bam2fastq/wrapper.py diff --git a/wrappers/bigwig_average_over_bed/wrapper.py b/smwrappers/bigwig_average_over_bed/wrapper.py similarity index 100% rename from wrappers/bigwig_average_over_bed/wrapper.py rename to smwrappers/bigwig_average_over_bed/wrapper.py diff --git a/wrappers/compute_RPK/wrapper.py b/smwrappers/compute_RPK/wrapper.py similarity index 100% rename from wrappers/compute_RPK/wrapper.py rename to smwrappers/compute_RPK/wrapper.py diff --git a/wrappers/compute_TPM/wrapper.py b/smwrappers/compute_TPM/wrapper.py similarity index 100% rename from wrappers/compute_TPM/wrapper.py rename to smwrappers/compute_TPM/wrapper.py diff --git a/wrappers/feature_count_reads/wrapper.py b/smwrappers/feature_count_reads/wrapper.py similarity index 100% rename from wrappers/feature_count_reads/wrapper.py rename to smwrappers/feature_count_reads/wrapper.py diff --git a/wrappers/filter_size_bam/wrapper.py b/smwrappers/filter_size_bam/wrapper.py similarity index 100% rename from wrappers/filter_size_bam/wrapper.py rename to smwrappers/filter_size_bam/wrapper.py diff --git a/wrappers/filter_unique_bam/wrapper.py b/smwrappers/filter_unique_bam/wrapper.py similarity index 100% rename from wrappers/filter_unique_bam/wrapper.py rename to smwrappers/filter_unique_bam/wrapper.py diff --git a/wrappers/filter_unique_sam/wrapper.py b/smwrappers/filter_unique_sam/wrapper.py similarity index 100% rename from wrappers/filter_unique_sam/wrapper.py rename to smwrappers/filter_unique_sam/wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.5v24inro.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.5v24inro.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.5v24inro.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.5v24inro.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.km0dybww.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.km0dybww.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.km0dybww.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.km0dybww.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.q_427g9f.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.q_427g9f.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.q_427g9f.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.q_427g9f.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py diff --git a/wrappers/htseq_count_reads/.snakemake.weqd46if.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.weqd46if.wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/.snakemake.weqd46if.wrapper.py rename to smwrappers/htseq_count_reads/.snakemake.weqd46if.wrapper.py diff --git a/wrappers/htseq_count_reads/wrapper.py b/smwrappers/htseq_count_reads/wrapper.py similarity index 100% rename from wrappers/htseq_count_reads/wrapper.py rename to smwrappers/htseq_count_reads/wrapper.py diff --git a/wrappers/intersect_count_reads/wrapper.py b/smwrappers/intersect_count_reads/wrapper.py similarity index 100% rename from wrappers/intersect_count_reads/wrapper.py rename to smwrappers/intersect_count_reads/wrapper.py diff --git a/wrappers/make_read_stats/wrapper.py b/smwrappers/make_read_stats/wrapper.py similarity index 100% rename from wrappers/make_read_stats/wrapper.py rename to smwrappers/make_read_stats/wrapper.py diff --git a/wrappers/map_on_genome/wrapper.py b/smwrappers/map_on_genome/wrapper.py similarity index 100% rename from wrappers/map_on_genome/wrapper.py rename to smwrappers/map_on_genome/wrapper.py diff --git a/wrappers/sam2indexedbam/wrapper.py b/smwrappers/sam2indexedbam/wrapper.py similarity index 100% rename from wrappers/sam2indexedbam/wrapper.py rename to smwrappers/sam2indexedbam/wrapper.py