From 6bbed10e5ab6f8b195a0a562376fbc5bc487cb06 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Mon, 28 Oct 2019 18:35:24 +0100
Subject: [PATCH] Change wrappers module name to smwrappers.
---
setup.py | 4 ++--
{wrappers => smwrappers}/__init__.py | 0
{wrappers => smwrappers}/bam2fastq/wrapper.py | 0
{wrappers => smwrappers}/bigwig_average_over_bed/wrapper.py | 0
{wrappers => smwrappers}/compute_RPK/wrapper.py | 0
{wrappers => smwrappers}/compute_TPM/wrapper.py | 0
{wrappers => smwrappers}/feature_count_reads/wrapper.py | 0
{wrappers => smwrappers}/filter_size_bam/wrapper.py | 0
{wrappers => smwrappers}/filter_unique_bam/wrapper.py | 0
{wrappers => smwrappers}/filter_unique_sam/wrapper.py | 0
.../htseq_count_reads/.snakemake.16u5vrtp.wrapper.py | 0
.../htseq_count_reads/.snakemake.5v24inro.wrapper.py | 0
.../htseq_count_reads/.snakemake.7d9py3f6.wrapper.py | 0
.../htseq_count_reads/.snakemake.by3fj1v8.wrapper.py | 0
.../htseq_count_reads/.snakemake.ftb48_zh.wrapper.py | 0
.../htseq_count_reads/.snakemake.km0dybww.wrapper.py | 0
.../htseq_count_reads/.snakemake.q4x91jrv.wrapper.py | 0
.../htseq_count_reads/.snakemake.q_427g9f.wrapper.py | 0
.../htseq_count_reads/.snakemake.uh5y8lab.wrapper.py | 0
.../htseq_count_reads/.snakemake.v2tkj33z.wrapper.py | 0
.../htseq_count_reads/.snakemake.weqd46if.wrapper.py | 0
{wrappers => smwrappers}/htseq_count_reads/wrapper.py | 0
{wrappers => smwrappers}/intersect_count_reads/wrapper.py | 0
{wrappers => smwrappers}/make_read_stats/wrapper.py | 0
{wrappers => smwrappers}/map_on_genome/wrapper.py | 0
{wrappers => smwrappers}/sam2indexedbam/wrapper.py | 0
26 files changed, 2 insertions(+), 2 deletions(-)
rename {wrappers => smwrappers}/__init__.py (100%)
rename {wrappers => smwrappers}/bam2fastq/wrapper.py (100%)
rename {wrappers => smwrappers}/bigwig_average_over_bed/wrapper.py (100%)
rename {wrappers => smwrappers}/compute_RPK/wrapper.py (100%)
rename {wrappers => smwrappers}/compute_TPM/wrapper.py (100%)
rename {wrappers => smwrappers}/feature_count_reads/wrapper.py (100%)
rename {wrappers => smwrappers}/filter_size_bam/wrapper.py (100%)
rename {wrappers => smwrappers}/filter_unique_bam/wrapper.py (100%)
rename {wrappers => smwrappers}/filter_unique_sam/wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.5v24inro.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.km0dybww.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.q_427g9f.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/.snakemake.weqd46if.wrapper.py (100%)
rename {wrappers => smwrappers}/htseq_count_reads/wrapper.py (100%)
rename {wrappers => smwrappers}/intersect_count_reads/wrapper.py (100%)
rename {wrappers => smwrappers}/make_read_stats/wrapper.py (100%)
rename {wrappers => smwrappers}/map_on_genome/wrapper.py (100%)
rename {wrappers => smwrappers}/sam2indexedbam/wrapper.py (100%)
diff --git a/setup.py b/setup.py
index a260f96..a27143a 100644
--- a/setup.py
+++ b/setup.py
@@ -2,7 +2,7 @@ from setuptools import setup, find_packages
setup(
name="snakemake_wrappers",
- version=0.2,
+ version=0.3,
description="Snakemake wrappers and rules that can be included in snakemake workflows.",
author="Blaise Li",
author_email="blaise.li@normalesup.org",
@@ -10,5 +10,5 @@ setup(
packages=find_packages(),
package_data={
"smincludes": ["*.rules"],
- "wrappers": ["*/wrapper.py"]},
+ "smwrappers": ["*/wrapper.py"]},
)
diff --git a/wrappers/__init__.py b/smwrappers/__init__.py
similarity index 100%
rename from wrappers/__init__.py
rename to smwrappers/__init__.py
diff --git a/wrappers/bam2fastq/wrapper.py b/smwrappers/bam2fastq/wrapper.py
similarity index 100%
rename from wrappers/bam2fastq/wrapper.py
rename to smwrappers/bam2fastq/wrapper.py
diff --git a/wrappers/bigwig_average_over_bed/wrapper.py b/smwrappers/bigwig_average_over_bed/wrapper.py
similarity index 100%
rename from wrappers/bigwig_average_over_bed/wrapper.py
rename to smwrappers/bigwig_average_over_bed/wrapper.py
diff --git a/wrappers/compute_RPK/wrapper.py b/smwrappers/compute_RPK/wrapper.py
similarity index 100%
rename from wrappers/compute_RPK/wrapper.py
rename to smwrappers/compute_RPK/wrapper.py
diff --git a/wrappers/compute_TPM/wrapper.py b/smwrappers/compute_TPM/wrapper.py
similarity index 100%
rename from wrappers/compute_TPM/wrapper.py
rename to smwrappers/compute_TPM/wrapper.py
diff --git a/wrappers/feature_count_reads/wrapper.py b/smwrappers/feature_count_reads/wrapper.py
similarity index 100%
rename from wrappers/feature_count_reads/wrapper.py
rename to smwrappers/feature_count_reads/wrapper.py
diff --git a/wrappers/filter_size_bam/wrapper.py b/smwrappers/filter_size_bam/wrapper.py
similarity index 100%
rename from wrappers/filter_size_bam/wrapper.py
rename to smwrappers/filter_size_bam/wrapper.py
diff --git a/wrappers/filter_unique_bam/wrapper.py b/smwrappers/filter_unique_bam/wrapper.py
similarity index 100%
rename from wrappers/filter_unique_bam/wrapper.py
rename to smwrappers/filter_unique_bam/wrapper.py
diff --git a/wrappers/filter_unique_sam/wrapper.py b/smwrappers/filter_unique_sam/wrapper.py
similarity index 100%
rename from wrappers/filter_unique_sam/wrapper.py
rename to smwrappers/filter_unique_sam/wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.16u5vrtp.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.5v24inro.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.5v24inro.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.5v24inro.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.5v24inro.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.7d9py3f6.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.by3fj1v8.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.ftb48_zh.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.km0dybww.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.km0dybww.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.km0dybww.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.km0dybww.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.q4x91jrv.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.q_427g9f.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.q_427g9f.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.q_427g9f.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.q_427g9f.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.uh5y8lab.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.v2tkj33z.wrapper.py
diff --git a/wrappers/htseq_count_reads/.snakemake.weqd46if.wrapper.py b/smwrappers/htseq_count_reads/.snakemake.weqd46if.wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/.snakemake.weqd46if.wrapper.py
rename to smwrappers/htseq_count_reads/.snakemake.weqd46if.wrapper.py
diff --git a/wrappers/htseq_count_reads/wrapper.py b/smwrappers/htseq_count_reads/wrapper.py
similarity index 100%
rename from wrappers/htseq_count_reads/wrapper.py
rename to smwrappers/htseq_count_reads/wrapper.py
diff --git a/wrappers/intersect_count_reads/wrapper.py b/smwrappers/intersect_count_reads/wrapper.py
similarity index 100%
rename from wrappers/intersect_count_reads/wrapper.py
rename to smwrappers/intersect_count_reads/wrapper.py
diff --git a/wrappers/make_read_stats/wrapper.py b/smwrappers/make_read_stats/wrapper.py
similarity index 100%
rename from wrappers/make_read_stats/wrapper.py
rename to smwrappers/make_read_stats/wrapper.py
diff --git a/wrappers/map_on_genome/wrapper.py b/smwrappers/map_on_genome/wrapper.py
similarity index 100%
rename from wrappers/map_on_genome/wrapper.py
rename to smwrappers/map_on_genome/wrapper.py
diff --git a/wrappers/sam2indexedbam/wrapper.py b/smwrappers/sam2indexedbam/wrapper.py
similarity index 100%
rename from wrappers/sam2indexedbam/wrapper.py
rename to smwrappers/sam2indexedbam/wrapper.py
--
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