diff --git a/requirements.txt b/requirements.txt
index 3c83e75ad251b6fb6efa07fe8fe91a032aceea11..e77cb2429bacb81e686a9bdac9efb1d9c8d6a51d 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,4 +1,4 @@
-libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@c6820e38561007a87359bffe59a4a0cb2cd3f9ec
+libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@e0d627032a22c34ecd6b3a2f5c6865187a4e057b
 libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git@b29b854ff1db6c87386007808286207b8af11b9d
 libreads @ git+https://gitlab.pasteur.fr/bli/libreads.git@91db379cd379f8f12fccdd3840d4369b7f09d444
 pandas
diff --git a/setup.py b/setup.py
index b36fd1e0a1dcec04aff1d6b930ef3f931f99152d..fc7d91c67c82a7ffd5e33d5558df36a375018261 100644
--- a/setup.py
+++ b/setup.py
@@ -23,7 +23,7 @@ setup(
     license="GNU GPLv3",
     packages=find_packages(),
     install_requires=[
-        "libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@c6820e38561007a87359bffe59a4a0cb2cd3f9ec",
+        "libhts @ git+https://gitlab.pasteur.fr/bli/libhts.git@e0d627032a22c34ecd6b3a2f5c6865187a4e057b",
         "libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git@b29b854ff1db6c87386007808286207b8af11b9d",
         "libreads @ git+https://gitlab.pasteur.fr/bli/libreads.git@91db379cd379f8f12fccdd3840d4369b7f09d444",
         "pandas",