From b69e9c3d2cd8ca9e1861819dd079e891314defe4 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Thu, 30 Jul 2020 19:25:30 +0200
Subject: [PATCH] Improve methods message.
---
smwrappers/map_on_genome/wrapper.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/smwrappers/map_on_genome/wrapper.py b/smwrappers/map_on_genome/wrapper.py
index b0edcad..8359a63 100644
--- a/smwrappers/map_on_genome/wrapper.py
+++ b/smwrappers/map_on_genome/wrapper.py
@@ -53,7 +53,7 @@ shell(mapping_command(snakemake.params.aligner))
if hasattr(snakemake.output, "methods"):
shell(f"cp {snakemake.input.methods} {snakemake.output.methods}")
- methods = f"The {snakemake.params.read_name} were mapped on the {snakemake.params.genome_name} using {snakemake.params.aligner} (version ${{{{v}}}}) with options {snakemake.params.settings}"
+ methods = f"# {snakemake.rule}\nThe {snakemake.params.read_name} reads were mapped on the {snakemake.params.genome_name} using {snakemake.params.aligner} (version ${{{{v}}}}) with options {snakemake.params.settings}."
shell(f"""
v=$({snakemake.params.aligner} --version | head -1 | awk '{{{{print $3}}}}')
echo "{methods}" >> {snakemake.output.methods}
--
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