diff --git a/README.md b/README.md index c84fc6d24c5b9690cdd87d1f7aeb494b3d46b52c..ac7e398f38a559f3d537ccaef083f78ea86bedc5 100644 --- a/README.md +++ b/README.md @@ -42,6 +42,15 @@ I haven't used it yet. URL: <https://github.com/yglukhov/nimpy> +### codon + +To compile code written in some restricted version of the Python language into +hopefully something more efficient than a Python script. + +I haven't tried it. + +URL: <https://docs.exaloop.io/codon> + ### beautifulsoup To parse XML formats. @@ -118,7 +127,7 @@ URL: <https://networkx.org/> ### polars Promises efficient data frames to use instead of pandas. -I haven't tried it yet as of august 2023. +I haven't tried it yet as of September 2024. URL: <https://www.pola.rs/> @@ -177,6 +186,12 @@ To work with genome annotations. URL: <https://daler.github.io/gffutils/> +### pyranges + +To work with genome annotations. + +URL: <https://pyranges.readthedocs.io/> + ### pybedtools Wrapper around bedtools, to work with genomic intervals. @@ -267,7 +282,7 @@ URL: <https://python-charts.com/> A way to store jupyter notebooks in a more human-readable format (without outputs), possibly paired with standard .ipynb notebook. -As of january 2024, I haven't tried it. +As of September 2024, I haven't tried it. URL: <https://github.com/mwouts/jupytext>