diff --git a/README.md b/README.md index a0745f62b2dc36e1a4cc77e981795ec26074babf..042fb3027d56013457edd58c68fceaa430a056d2 100644 --- a/README.md +++ b/README.md @@ -42,6 +42,13 @@ I haven't used it yet. URL: <https://github.com/yglukhov/nimpy> +### beautifulsoup + +To parse XML formats. + +URL: <https://www.crummy.com/software/BeautifulSoup/> + + ## Data analysis ### scipy @@ -52,7 +59,7 @@ URL: <https://docs.scipy.org/doc/scipy/index.html> ### numpy -Like with scipy, I usually use it in combination with +Like with scipy, I usually use it in combination with other libraries that depend on it. URL: <https://numpy.org/> @@ -64,10 +71,14 @@ URL: <https://pandas.pydata.org/> ### scikit-learn +General machine learning. + URL: <https://scikit-learn.org/stable/> ### matplotlib +Graphics. + URL: <https://matplotlib.org/> ### seaborn @@ -153,6 +164,19 @@ Wrapper around bedtools, to work with genomic intervals. URL: <https://daler.github.io/pybedtools/> +### deeptools + +Various tools to display "deep" sequencing data. There is a Python API. + +URL: <https://deeptools.readthedocs.io/en/develop/index.html> + + +### pybigwig + +To handle bigwig files. + +URL: <https://github.com/deeptools/pyBigWig> + ### biotite I used some of the tools it provides to display sequences, with colours: