Verified Commit 598bf616 authored by Bertrand  NÉRON's avatar Bertrand NÉRON

Merge branch 'branch_1.0'

parents 27b9ed49 7ee730b6
Pipeline #17164 passed with stages
in 2 minutes and 9 seconds
pysam==0.15.2
matplotlib>=3.0
pandas>=0.24
numpy>=1.16
pillow>=5.4
psutil>=5.6
scipy>=0.16.1
\ No newline at end of file
matplotlib==3.1.1
pandas==0.25.2
numpy==1.17.3
pillow==6.2.0
psutil==5.6.3
scipy==1.3.1
\ No newline at end of file
......@@ -22,6 +22,9 @@ from: ubuntu:bionic
#################################
# installing craw #
#################################
export PYTHONNOUSERSITE=1
# don't add user site-packages directory to sys.path.
# this avoid to interact with ~/.local
cd /usr/local/src
git clone https://gitlab.pasteur.fr/bneron/craw/
cd craw
......@@ -37,6 +40,12 @@ from: ubuntu:bionic
apt-get autoremove -y
apt-get clean -y
%environment
# to be reproducible we should nevr search
# in python user cache which is the user home
# and is mounted automically
export PYTHONNOUSERSITE=1
%test
/usr/bin/python3 /craw/tests/run_tests.py -vv
......
......@@ -22,6 +22,7 @@ from: ubuntu:bionic
#################################
# installing craw #
#################################
export PYTHONNOUSERSITE=1
pip3 install craw==1.0
#################################
......@@ -31,6 +32,13 @@ from: ubuntu:bionic
apt-get autoremove -y
apt-get clean -y
%environment
# to be reproducible we should nevr search
# in python user cache which is the user home
# and is mounted automically
export PYTHONNOUSERSITE=1
%test
mkdir /test_craw
cd /test_craw
......@@ -39,6 +47,7 @@ from: ubuntu:bionic
/usr/bin/python3 craw-1.0.0/tests/run_tests.py -vv
cd /
rm -Rf /test_craw
%help
This singularity image contains the Counter RNAseq Window (CRAW) package.
Two commands are available \"coverage\" and \"htmp\.
......
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