diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index d0656722b7bb6b13ea5a322aeb9803b1042e6019..b85aa74673213224d32a1c85ee72e6e41a864401 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,6 +1,6 @@
-image: registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:latest
-services:
- - registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:dind
+# image: registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:latest
+# services:
+# - registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:dind
# variables:
# DOCKER_HOST: tcp://localhost:2375
@@ -14,12 +14,12 @@ services:
.docker-build:
stage: docker-build
- image: registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:latest
+ image: docker:24
variables:
IMAGE_NAME: "cc-qtl"
CONTEXT: "."
- services:
- - registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:dind
+ # services:
+ # - registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:dind
before_script:
- docker login -u "$CI_REGISTRY_USER" -p "$CI_REGISTRY_PASSWORD" $CI_REGISTRY
script:
@@ -268,19 +268,19 @@ delete-helm-release:
script:
- echo "Removing $CI_COMMIT_REF_SLUG"
- helm delete -n ${NAMESPACE} ${CI_COMMIT_REF_SLUG}
-delete-helm-release-prod:
- stage: deploy
- when: manual
- image: harbor.pasteur.fr/kube-system/helm-kubectl:3.4.0
- variables:
- GIT_STRATEGY: none # important to not checkout source when branch is deleted
- NAMESPACE: "cc-qtl-prod"
- environment:
- name: "k8sprod-02/${CI_COMMIT_REF_SLUG}"
- action: stop
- script:
- - echo "Removing $CI_COMMIT_REF_SLUG"
- - helm delete -n ${NAMESPACE} ${CI_COMMIT_REF_SLUG}
- only:
- refs:
- - master
+# delete-helm-release-prod:
+# stage: deploy
+# when: manual
+# image: harbor.pasteur.fr/kube-system/helm-kubectl:3.4.0
+# variables:
+# GIT_STRATEGY: none # important to not checkout source when branch is deleted
+# NAMESPACE: "cc-qtl-prod"
+# environment:
+# name: "k8sprod-02/${CI_COMMIT_REF_SLUG}"
+# action: stop
+# script:
+# - echo "Removing $CI_COMMIT_REF_SLUG"
+# - helm delete -n ${NAMESPACE} ${CI_COMMIT_REF_SLUG}
+# only:
+# refs:
+# - master
diff --git a/client/components/GalaxyForm/BooleanToolParameter.vue b/client/components/GalaxyForm/BooleanToolParameter.vue
index d05b27da48b172922a38b0001245f6c2d29fd481..3b893a6aee4f8deef2f817d31210a7b0ff3f2b2f 100644
--- a/client/components/GalaxyForm/BooleanToolParameter.vue
+++ b/client/components/GalaxyForm/BooleanToolParameter.vue
@@ -5,6 +5,7 @@
:label="input.label"
:true-value="input.truevalue"
:false-value="input.falsevalue"
+ :disabled="disabled"
inset
@change="handleInput"
></v-switch>
@@ -19,6 +20,7 @@ export default {
},
props: {
input: { type: Object, default: () => ({}) },
+ disabled: { type: Boolean, default: false },
value: { type: String, default: 'false' },
},
methods: {
diff --git a/client/components/GalaxyForm/IntegerToolParameter.vue b/client/components/GalaxyForm/IntegerToolParameter.vue
index 3fa9392026027c650300f728ee24aa213abbcdb3..794fc3c6e603b551e2a56b094b7cbe6f6dd3a95c 100644
--- a/client/components/GalaxyForm/IntegerToolParameter.vue
+++ b/client/components/GalaxyForm/IntegerToolParameter.vue
@@ -5,6 +5,7 @@
type="number"
:value="value"
:label="input.label"
+ :disabled="disabled"
@input="handleInput"
></v-text-field>
<div v-else>
@@ -14,6 +15,7 @@
:min="input.min"
:max="input.max"
persistent-hint
+ :disabled="disabled"
@input="handleInput"
>
<template v-slot:append>
@@ -25,6 +27,7 @@
type="number"
style="width: 80px"
outlined
+ :disabled="disabled"
@change="handleInput"
@click="clickInput"
></v-text-field>
@@ -42,6 +45,7 @@ export default {
},
props: {
input: { type: Object, default: () => ({}) },
+ disabled: { type: Boolean, default: false },
value: { type: String, default: '' },
},
methods: {
diff --git a/client/components/GalaxyForm/PhenotypesSelect.vue b/client/components/GalaxyForm/PhenotypesSelect.vue
index 61c9453bbad14e4a980f8159077350a11f715fc2..fdb3ec1f2df7b638f0193aa885b4493744dced03 100644
--- a/client/components/GalaxyForm/PhenotypesSelect.vue
+++ b/client/components/GalaxyForm/PhenotypesSelect.vue
@@ -17,7 +17,7 @@
:headers="headers"
:items="phenotypes"
:search="search"
- show-select
+ :show-select="!disabled"
@input="handleInput"
></v-data-table>
</v-card>
@@ -38,6 +38,7 @@ export default {
props: {
value: { type: Array, default: () => [] },
experimentId: { type: Number, default: null, required: true },
+ disabled: { type: Boolean, default: false },
},
async fetch() {
const { id: projectId } = this.$route.params
diff --git a/client/components/GalaxyForm/SelectToolParameter.vue b/client/components/GalaxyForm/SelectToolParameter.vue
index 9843fc6cba74c552d373878f624272622f0609ea..bd80aa9152926c2e49992ff3d7e9fc7e290f28fa 100644
--- a/client/components/GalaxyForm/SelectToolParameter.vue
+++ b/client/components/GalaxyForm/SelectToolParameter.vue
@@ -11,6 +11,7 @@
outlined
dense
@input="handleInput"
+ :disabled="disabled"
></v-select>
</div>
</template>
@@ -24,6 +25,7 @@ export default {
props: {
input: { type: Object, default: () => ({}) },
value: { type: String, default: '' },
+ disabled: { type: Boolean, default: false },
},
computed: {
diff --git a/client/components/GalaxyForm/TextToolParameter.vue b/client/components/GalaxyForm/TextToolParameter.vue
index cc1328fae236442c0e73589f94947be50b95e5c4..65bee5d3df6df4fea090965806dabc9812e908f7 100644
--- a/client/components/GalaxyForm/TextToolParameter.vue
+++ b/client/components/GalaxyForm/TextToolParameter.vue
@@ -4,6 +4,7 @@
:value="value"
:label="input.label"
outlined
+ :disabled="disabled"
@input="handleInput"
></v-text-field>
</div>
@@ -17,6 +18,7 @@ export default {
},
props: {
input: { type: Object, default: () => ({}) },
+ disabled: { type: Boolean, default: false },
value: { type: String, default: '' },
},
methods: {
diff --git a/client/components/Phenotype/Phenotype.vue b/client/components/Phenotype/Phenotype.vue
index b142768a197e8a0219971c67422d552a754214df..d6660717ff884594e8168bf6b3cbc22fcdac23a0 100644
--- a/client/components/Phenotype/Phenotype.vue
+++ b/client/components/Phenotype/Phenotype.vue
@@ -1,10 +1,10 @@
<template>
<v-card flat color="transparent">
<generic-item
- item-type="Phenotype"
+ item-type="Traits and covars"
:item="phenotype"
:item-list-location="{
- label: 'Phenotypes',
+ label: 'Traits and covars',
name: 'phenotypes',
}"
:item-actions="computedPhenotypeActions"
@@ -30,7 +30,7 @@
type="categories"
:items="sanitizedCategories"
:headers="categoryHeaders"
- title="Categories"
+ title="Traits and covars group"
></generic-table>
</v-card>
</v-list-item-content>
@@ -90,7 +90,7 @@ export default {
{ text: 'Description', value: 'description' },
{ text: 'CC lines total number', value: 'cclines_count' },
{ text: 'Creation Date', value: 'creation_date' },
- { text: 'Phenotypes', value: 'phenotypes', sortable: false },
+ { text: 'Traits and covars', value: 'phenotypes', sortable: false },
{ text: 'Project', value: 'project.project_name' },
],
analysisHeaders: [
diff --git a/client/components/RunAnalysisForm.vue b/client/components/RunAnalysisForm.vue
index a738263d036374c4910893b69d3310e169d8d5c3..c87d8b937c6915de70cac05f9fb7ba5f39b025b3 100644
--- a/client/components/RunAnalysisForm.vue
+++ b/client/components/RunAnalysisForm.vue
@@ -27,7 +27,7 @@
:items="experiments"
:single-select="singleSelect"
item-key="id"
- show-select
+ :show-select="!waiting"
class="elevation-1"
>
</v-data-table>
@@ -90,6 +90,7 @@
persistent-hint
outlined
required
+ :disabled="waiting"
></v-text-field>
</ValidationProvider>
<ValidationProvider
@@ -106,6 +107,7 @@
counter
clearable
:error-messages="errors"
+ :disabled="waiting"
></v-textarea>
</ValidationProvider>
@@ -114,6 +116,7 @@
:value="selectedPhenotypes"
:experiment-id="selectedExperiments[0]?.id"
@input="handleSelectedPhenotypes"
+ :disabled="waiting"
></phenotypes-select>
</v-card-text>
<!-- <v-card-title>Set workflow parameters</v-card-title> -->
@@ -159,6 +162,7 @@
]
"
:input="stepInput"
+ :disabled="waiting"
/>
<integer-tool-parameter
@@ -175,6 +179,7 @@
]
"
:input="stepInput"
+ :disabled="waiting"
/>
<boolean-tool-parameter
@@ -191,6 +196,7 @@
]
"
:input="stepInput"
+ :disabled="waiting"
/>
<template
@@ -217,6 +223,7 @@
clearable
chips
deletable-chips
+ :disabled="waiting"
></v-combobox
></template>
<template
@@ -247,6 +254,7 @@
clearable
chips
deletable-chips
+ :disabled="waiting"
></v-combobox
></template>
<template
@@ -263,6 +271,7 @@
stepInput.name
]
"
+ :disabled="waiting"
:input="stepInput"
/>
</template>
diff --git a/client/layouts/default.vue b/client/layouts/default.vue
index de92a053aca1a91769e3954f89726ae0f31b3cb9..d9d19383ec5b220c7e00031eb1e23627751fd783 100644
--- a/client/layouts/default.vue
+++ b/client/layouts/default.vue
@@ -151,12 +151,12 @@ export default {
// },
{
icon: 'mdi-details',
- title: 'Phenotypes',
+ title: 'Traits and covars',
to: '/phenotypes',
},
{
icon: 'mdi-shape',
- title: 'Phenotype Categories',
+ title: 'Traits and covars group',
to: '/phenotype-categories',
},
],
diff --git a/client/pages/analysis.vue b/client/pages/analysis.vue
index baeaeeb5b24b7e87449ded71bb51acd86c68f470..ae769b26c69dde92ee6b43d0b6b2243d645b45a4 100644
--- a/client/pages/analysis.vue
+++ b/client/pages/analysis.vue
@@ -54,7 +54,7 @@ export default {
{ text: 'Creation Date', value: 'creation_date' },
{ text: 'Galaxy history state', value: 'history_status' },
{ text: 'Galaxy workflow state', value: 'status' },
- { text: 'Phenotypes', value: 'phenotypes' },
+ { text: 'Traits and covars', value: 'phenotypes' },
{ text: 'Additive covariates', value: 'covariates' },
{ text: 'Project', value: 'project.project_name' },
{ text: 'Experiment', value: 'experiment.name' },
diff --git a/client/pages/experiments.vue b/client/pages/experiments.vue
index 45eb9e5bfc9ff94c37ae51f72d05d4196dff5579..c09eb1ad29448e1f8ac543421b1f1d96e3f0ed05 100644
--- a/client/pages/experiments.vue
+++ b/client/pages/experiments.vue
@@ -51,7 +51,7 @@ export default {
{ text: 'Name', value: 'name' },
{ text: 'Description', value: 'description' },
{ text: 'Creation Date', value: 'creation_date' },
- { text: 'Phenotypes', value: 'phenotypes' },
+ { text: 'Traits and covars', value: 'phenotypes' },
// { text: 'Ontologies', value: 'ontologies' },
{ text: 'Project', value: 'project.project_name' },
],
diff --git a/client/pages/phenotype-categories/add.vue b/client/pages/phenotype-categories/add.vue
index 47446944261fea89fab6a593a7346605e1f0a8d4..32dc732c9cbd952285f876349227d09f31279549 100644
--- a/client/pages/phenotype-categories/add.vue
+++ b/client/pages/phenotype-categories/add.vue
@@ -57,7 +57,7 @@ export default {
data() {
return {
- formTitle: 'New phenotype category',
+ formTitle: 'New traits and covars group',
phenotypeCategory: {
name: '',
description: '',
diff --git a/client/pages/phenotype-categories/index.vue b/client/pages/phenotype-categories/index.vue
index bb1ba7bf5ffb9ffbd32112084bc086c49521f9f4..f77f6743b7468a272639e53790f7eb01692576d9 100644
--- a/client/pages/phenotype-categories/index.vue
+++ b/client/pages/phenotype-categories/index.vue
@@ -14,7 +14,7 @@
>
<template v-slot:top>
<v-toolbar flat>
- <v-toolbar-title> Phenotype Categories </v-toolbar-title>
+ <v-toolbar-title> Traits and covars group </v-toolbar-title>
<v-divider class="mx-4" inset vertical></v-divider>
<v-text-field
v-model="search"
@@ -37,8 +37,8 @@
<v-dialog v-model="dialogDelete" max-width="800px">
<v-card>
<v-card-title class="text-h5"
- >Are you sure you want to delete this phenotype
- category?</v-card-title
+ >Are you sure you want to delete this traits and covars group
+ ?</v-card-title
>
<v-card-actions>
<v-spacer></v-spacer>
@@ -78,7 +78,7 @@
<v-dialog v-model="dialog" max-width="800px">
<phenotype-category-form
:options="options"
- form-title="Edit Phenotype Category"
+ form-title="Edit traits and covars group"
:new-item="newItem"
v-bind.sync="phenotypeCategory"
:ontologies-items="ontologiesItems"
diff --git a/client/pages/phenotypes/index.vue b/client/pages/phenotypes/index.vue
index 538fd39555e839ed2a0bc222f4981417d938f44e..b7b9ebf08745d7165962ce264cf77be98ac2aad3 100644
--- a/client/pages/phenotypes/index.vue
+++ b/client/pages/phenotypes/index.vue
@@ -1,8 +1,8 @@
<template>
<v-card>
<generic-table
- type="phenotypes"
- title="Phenotypes"
+ type="Traits and covars record in db"
+ title="Traits and covars record in db"
:headers="headers"
:items="sanitizedPhenotypes"
:loading="$fetchState.pending"
@@ -31,7 +31,11 @@ export default {
{ text: 'ID', value: 'id' },
{ text: 'Name', value: 'name' },
{ text: 'Primitive', value: 'primitive_long' },
- { text: 'Categories', value: 'categories', sortable: false },
+ {
+ text: 'Traits and covars groups',
+ value: 'categories',
+ sortable: false,
+ },
],
}
},
diff --git a/client/pages/projects/_id/analysis/index.vue b/client/pages/projects/_id/analysis/index.vue
index c12621f6e1bd1a15cb2c348b37cde30ff351aa6c..278ba94683e10fb2a758bb6f9015b28e58ed2d52 100644
--- a/client/pages/projects/_id/analysis/index.vue
+++ b/client/pages/projects/_id/analysis/index.vue
@@ -82,7 +82,7 @@ export default {
sortable: false,
},
{ text: 'Galaxy Workflow State', value: 'status' },
- { text: 'Phenotypes', value: 'phenotypes' },
+ { text: 'Traits and covars', value: 'phenotypes' },
{ text: 'Additive covariates', value: 'covariates' },
{ text: 'Action', value: 'actions', sortable: false },
diff --git a/client/pages/projects/_id/experiments/_experimentId.vue b/client/pages/projects/_id/experiments/_experimentId.vue
index 67a59f9c8873ddf4f71642e9e6affa17f242f341..8e05730a12c785f6e1e1391260bf10ad40378bd5 100644
--- a/client/pages/projects/_id/experiments/_experimentId.vue
+++ b/client/pages/projects/_id/experiments/_experimentId.vue
@@ -78,7 +78,7 @@
<v-card-text>
<v-card flat class="my-2" outlined>
<v-toolbar flat class="mb-3">
- <v-toolbar-title>Plot phenotype data</v-toolbar-title>
+ <v-toolbar-title>Plot traits and covars data</v-toolbar-title>
<v-divider class="mx-4" inset vertical></v-divider>
<v-spacer></v-spacer>
@@ -93,7 +93,7 @@
<v-spacer></v-spacer><v-chip small color="accent">Plot</v-chip>
</v-toolbar>
<v-card-title
- >Raw Phenotype
+ >Raw trait or covar
<v-dialog :max-width="1000">
<template v-slot:activator="{ on, attrs }"
><v-btn icon color="primary" v-bind="attrs" v-on="on"
@@ -135,7 +135,7 @@
></phenotype-distribution>
</v-card-text>
<v-card-title
- >Transformed Phenotype
+ >Transformed traits or covars
<v-dialog :max-width="1000">
<template v-slot:activator="{ on, attrs }"
><v-btn icon color="primary" v-bind="attrs" v-on="on"
@@ -296,7 +296,7 @@ export default {
{ text: 'Id', value: 'id' },
{ text: 'Name', value: 'name' },
{ text: 'Creation Date', value: 'creation_date' },
- { text: 'Phenotypes', value: 'phenotypes' },
+ { text: 'Traits and covars', value: 'phenotypes' },
{ text: 'Status', value: 'history_status' },
],
analysisFooterProps: { 'items-per-page-options': [10, 20, 30, -1] },
diff --git a/client/pages/projects/_id/experiments/index.vue b/client/pages/projects/_id/experiments/index.vue
index bdf2622c323d9d5c7027201c0534d01cd45918ba..7f895abb1d3601683017cbc40087efc2a4e63f47 100644
--- a/client/pages/projects/_id/experiments/index.vue
+++ b/client/pages/projects/_id/experiments/index.vue
@@ -57,7 +57,7 @@ export default {
{ text: 'Description', value: 'description' },
{ text: 'Creation Date', value: 'creation_date' },
{ text: 'Mouse Count', value: 'cclines' },
- { text: 'Phenotypes', value: 'phenotypes' },
+ { text: 'Traits and covars', value: 'phenotypes' },
{ text: 'Actions', value: 'actions', sortable: false },
],
}
diff --git a/server/api/galaxy-workflow/ccqtl-wf_0.0.1_beta.2.ga b/server/api/galaxy-workflow/ccqtl-wf_0.0.1_beta.2.ga
index 05bcb49c75da230584415f37b761b98bb9e1d9a5..e46e057d44c9da0a6fd6babbdbc6bee4309cd4ff 100644
--- a/server/api/galaxy-workflow/ccqtl-wf_0.0.1_beta.2.ga
+++ b/server/api/galaxy-workflow/ccqtl-wf_0.0.1_beta.2.ga
@@ -167,27 +167,27 @@
{
"label": "CCQTL: Make input files on input dataset(s): genofiles",
"output_name": "genofiles",
- "uuid": "08db38ae-0270-4127-a55a-c4faf06c9626"
+ "uuid": "7cedde1f-4b22-4516-84c9-71f8460f4a00"
},
{
"label": "CCQTL: Make input files on input dataset(s): pheno.csv",
"output_name": "phenotypes_out",
- "uuid": "e65740ba-3234-4e77-96aa-573a2b229234"
+ "uuid": "6e101153-ddfb-41da-ab25-c45300ce3409"
},
{
"label": "CCQTL: Make input files on input dataset(s): covar.csv",
"output_name": "covariables_out",
- "uuid": "71937cbf-d232-4b01-86e1-17a6c632a187"
+ "uuid": "d57b528b-eef7-4993-a381-2fef86d507b9"
},
{
"label": "CCQTL: Make input files on input dataset(s): crossinfo_rft.csv",
"output_name": "crossinfo",
- "uuid": "ba3ad284-c46b-4484-98b5-9a4ead2b6a16"
+ "uuid": "4d335952-a73d-417a-9965-583ef06e1df8"
},
{
"label": "CCQTL: Make input files on input dataset(s): control_file.yaml",
"output_name": "control_file",
- "uuid": "9819988a-8f4f-4c69-b527-1ba62df51640"
+ "uuid": "cbcf930d-ae62-4c17-95ee-048798eab98b"
}
]
},
@@ -229,7 +229,7 @@
],
"position": {
"left": 566,
- "top": 250.0
+ "top": 247.0
},
"post_job_actions": {
"DeleteIntermediatesActionlod": {
@@ -263,13 +263,13 @@
{
"label": "CCQTL: Run genome scan on input dataset(s): lod.csv",
"output_name": "lod",
- "uuid": "bd181368-be22-4efa-9bf5-86eb4c03c962"
+ "uuid": "4817f86b-3828-4271-b526-e88780bbdddd"
}
]
},
"4": {
"annotation": "",
- "content_id": "toolshed.g2.bx.psu.edu/repos/rplanel/ccqtl_permutations/ccqtl_permutations/0.0.1_beta.2+galaxy0",
+ "content_id": "toolshed.g2.bx.psu.edu/repos/rplanel/ccqtl_permutations/ccqtl_permutations/0.0.1_beta.2+galaxy1",
"errors": null,
"id": 4,
"input_connections": {
@@ -330,7 +330,7 @@
],
"position": {
"left": 864,
- "top": 261.0
+ "top": 258.0
},
"post_job_actions": {
"DeleteIntermediatesActionoperm_lmm": {
@@ -359,15 +359,15 @@
"output_name": "stratcovar_modmat"
}
},
- "tool_id": "toolshed.g2.bx.psu.edu/repos/rplanel/ccqtl_permutations/ccqtl_permutations/0.0.1_beta.2+galaxy0",
+ "tool_id": "toolshed.g2.bx.psu.edu/repos/rplanel/ccqtl_permutations/ccqtl_permutations/0.0.1_beta.2+galaxy1",
"tool_shed_repository": {
- "changeset_revision": "6b6c9ab21674",
+ "changeset_revision": "2df37db680ad",
"name": "ccqtl_permutations",
"owner": "rplanel",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
- "tool_state": "{\"clean_pr\": {\"__class__\": \"RuntimeValue\"}, \"covar_modmat\": {\"__class__\": \"RuntimeValue\"}, \"crossdata\": {\"__class__\": \"RuntimeValue\"}, \"kloco\": {\"__class__\": \"RuntimeValue\"}, \"n_perm\": \"5\", \"strat_covar\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
- "tool_version": "0.0.1_beta.2+galaxy0",
+ "tool_state": "{\"clean_pr\": {\"__class__\": \"RuntimeValue\"}, \"covar_modmat\": {\"__class__\": \"RuntimeValue\"}, \"crossdata\": {\"__class__\": \"RuntimeValue\"}, \"kloco\": {\"__class__\": \"RuntimeValue\"}, \"n_perm\": \"100\", \"strat_covar\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+ "tool_version": "0.0.1_beta.2+galaxy1",
"type": "tool",
"uuid": "4bc68f9b-47d6-41f1-91c8-fb601a74b414",
"workflow_outputs": []
@@ -434,7 +434,7 @@
],
"position": {
"left": 1172,
- "top": 115.0
+ "top": 119.0
},
"post_job_actions": {
"DeleteIntermediatesActioncoefficients": {
@@ -463,22 +463,22 @@
{
"label": "CCQTL: Retrieves QTL intervals on input dataset(s): coefficients",
"output_name": "coefficients",
- "uuid": "2b71fd28-08e8-49a0-ab3e-0e1b12d4fd2d"
+ "uuid": "c1e37eb3-fd40-4aca-a774-e8d57b397b73"
},
{
"label": "CCQTL: Retrieves QTL intervals on input dataset(s): peaks.csv",
"output_name": "peaks_csv",
- "uuid": "49b7512b-394e-4257-94c5-547a02f1c5fd"
+ "uuid": "5c152849-803c-48b8-aa64-7da99c660345"
},
{
"label": "CCQTL: Retrieves QTL intervals on input dataset(s): significance-threshold.csv",
"output_name": "significance_threshold",
- "uuid": "6f34b1ce-08e4-4332-9c02-9a13b8623664"
+ "uuid": "f5a5098f-133a-4b86-bef6-7926e602a876"
},
{
"label": "CCQTL: Retrieves QTL intervals on input dataset(s): haplotypes",
"output_name": "haplotypes",
- "uuid": "62cc1400-92f7-40d9-bf33-e836693a5c47"
+ "uuid": "2efb6b61-ad8f-4c51-bb1e-9592c2dffb65"
}
]
},
@@ -528,7 +528,7 @@
],
"position": {
"left": 1460,
- "top": 648.0
+ "top": 629.0
},
"post_job_actions": {
"DeleteIntermediatesActiongenes": {
@@ -552,22 +552,22 @@
{
"label": "CCQTL: Refine QTL intervals on input dataset(s): snp association",
"output_name": "snps_assoc",
- "uuid": "8c6ab668-0386-4f1d-a29c-875b26bc1187"
+ "uuid": "7db2fbd2-fa26-49e4-b937-926cc4efa54d"
},
{
"label": "CCQTL: Refine QTL intervals on input dataset(s): genes",
"output_name": "genes",
- "uuid": "d473b1f9-e3db-45af-8f23-14cb317d8ed9"
+ "uuid": "685f99cc-79cf-4753-9f28-d0dcf425cb14"
},
{
"label": "CCQTL: Refine QTL intervals on input dataset(s): refine-peaks.csv",
"output_name": "refine_peaks",
- "uuid": "133b4cba-6ed1-4c6b-91fc-8f6c50645de4"
+ "uuid": "0a2a7f0c-fb84-486d-b9a9-bc9e4029e509"
},
{
"label": "CCQTL: Refine QTL intervals on input dataset(s): top snps",
"output_name": "top_snps",
- "uuid": "888164e1-336f-4a7b-af60-fa4726f7b6f1"
+ "uuid": "b27473e1-a23a-4e3a-8f2d-1a21239734d9"
}
]
}
@@ -575,6 +575,6 @@
"tags": [
"v0.0.1_beta.2"
],
- "uuid": "90ba8cb9-268c-4f0e-a99a-78174b5ab100",
- "version": 5
+ "uuid": "b327de88-aba2-4abf-b1c1-7e3afa83e1c3",
+ "version": 3
}
\ No newline at end of file