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MSFit_to_txt-module.html 11.36 KiB
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Module MSFit_to_txt
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module MSFit_to_txt</h1><p class="nomargin-top"><span class="codelink"><a href="MSFit_to_txt-pysrc.html">source code</a></span></p>
<p>MSFit to Table v 0.2</p>
<p>New version, based on HTMLparser</p>
<p>A tool with GUI to collect data from a series of MSFit HTML
identification files in a unique table</p>
<p>Written using wxPython in Python, August 2004, Cosmin Modified to be
more general and flexible, Sept 2004 Included the HTML parser in the
script, 2008-04-29</p>
<p>Alain Jacquier's laboratory, Institut Pasteur, Paris, France</p>
<p>INSTRUCTIONS:</p>
<p>Place the files with .html or .htm extension in a folder From the File
menu select Choose directory... You will be able to see a list of the
html files in your directory</p>
<p>From the File menu choose Collect to..., the global file will be saved
under the name you specify.</p>
<!-- ==================== CLASSES ==================== -->
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<a href="MSFit_to_txt.MSFit32ParserProt-class.html" class="summary-name">MSFit32ParserProt</a><br />
A parser for MSFit HTML results to obtain a dictionary of data
corresponding to the page Only protein information is retained
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<span class="summary-type"> </span>
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<a href="MSFit_to_txt.MainFrame-class.html" class="summary-name">MainFrame</a>
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<td><span class="summary-sig"><a name="Read_Dir"></a><span class="summary-sig-name">Read_Dir</span>(<span class="summary-sig-arg">dirname</span>)</span><br />
Recover information for all the files in a folder, recursively
Collect data in a list of complete path names, returned</td>
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<span class="codelink"><a href="MSFit_to_txt-pysrc.html#Read_Dir">source code</a></span>
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<span class="summary-sig-arg">outlist</span>)</span><br />
Writes a list of lists to a tab delimited text file</td>
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<a name="pepseqRE"></a><span class="summary-name">pepseqRE</span> = <code title="r"sequence=([A-Z]+)\*?\\"">r"sequence=([A-Z]+)\*?\\"</code>
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<a name="peplinePATT"></a><span class="summary-name">peplinePATT</span> = <code title="re.compile(pepseqRE)">re.compile(pepseqRE)</code>
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<a name="pepseqmodRE"></a><span class="summary-name">pepseqmodRE</span> = <code title="r"\)([A-Z]+)\*?\("">r"\)([A-Z]+)\*?\("</code>
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<a name="peplinePATTmod"></a><span class="summary-name">peplinePATTmod</span> = <code title="re.compile(pepseqmodRE)">re.compile(pepseqmodRE)</code>
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<a name="ID_ABOUT"></a><span class="summary-name">ID_ABOUT</span>
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<a name="ID_EXIT"></a><span class="summary-name">ID_EXIT</span>
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<a name="ID_COLLECTTO"></a><span class="summary-name">ID_COLLECTTO</span>
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<a name="app"></a><span class="summary-name">app</span> = <code title="wx.PySimpleApp()">wx.PySimpleApp()</code>
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<a name="frame"></a><span class="summary-name">frame</span> = <code title="MainFrame(None,-1, "MSFit to txt v. 0.2")">MainFrame(None,-1, "MSFit to txt v. 0.2")</code>
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