From 6c71b29752d2305d491867b35b396df26347d9ed Mon Sep 17 00:00:00 2001
From: Remi Planel <rplanel@pasteur.fr>
Date: Fri, 3 Apr 2020 17:49:54 +0200
Subject: [PATCH] Add guide positions on input sequence target
---
crisprbact/cli.py | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/crisprbact/cli.py b/crisprbact/cli.py
index b378ed0..9568ddd 100644
--- a/crisprbact/cli.py
+++ b/crisprbact/cli.py
@@ -30,7 +30,9 @@ OFF_TARGET_DETAILS = [
]
HEADER = [
"target_id",
- "target",
+ "guide",
+ "guide_start",
+ "guide_end",
"PAM position",
"prediction",
"target_seq_id",
@@ -170,7 +172,9 @@ def write_guide_rnas(guide_rnas, output_file, seq_id="N/A"):
for guide_rna in guide_rnas:
row = [
str(guide_rna["target_id"]),
- guide_rna["target"],
+ guide_rna["guide"],
+ str(guide_rna["start"]),
+ str(guide_rna["stop"]),
str(guide_rna["pam"]),
str(guide_rna["pred"]),
seq_id,
--
GitLab