From 90bf01f974dfc81f3bdf62184d98b65cb47dc4a3 Mon Sep 17 00:00:00 2001
From: Remi Planel <rplanel@pasteur.fr>
Date: Fri, 20 Mar 2020 12:01:10 +0100
Subject: [PATCH] Remove longest_perfect_match_length from dataframe
---
crisprbact/predict.py | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/crisprbact/predict.py b/crisprbact/predict.py
index 4113aad..49ed322 100644
--- a/crisprbact/predict.py
+++ b/crisprbact/predict.py
@@ -95,8 +95,7 @@ def on_target_predict(seq, genome=None, seed_sizes=[8, 9, 10, 11, 12]):
"pampos",
"strand",
"recid",
- "max_matching_len",
- "max_matching_seq",
+ "longest_perfect_match",
"pam_seq",
"features",
],
@@ -113,11 +112,11 @@ def on_target_predict(seq, genome=None, seed_sizes=[8, 9, 10, 11, 12]):
"off_target_pampos": off_t[2],
"off_target_strand": off_t[3],
"off_target_recid": off_t[4],
- "off_target_longest_perfect_match": off_t[6],
- "off_target_pam_seq": off_t[7],
+ "off_target_longest_perfect_match": off_t[5],
+ "off_target_pam_seq": off_t[6],
"off_target_good_orientation": None,
}
- index_features = 8
+ index_features = 7
# Loop through features associated to an off-target position
if len(off_t[index_features]) > 0:
# Loop for each feature
--
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