GitLab

Material for Diderot 2020-2021

A module handling basic fonctionnality needed in django project such as base.html using bootstrap, account settings, preferences management, ...

Django based project to build metagenomics genes catalog

POM template for Icy plugins

Parent POM for Icy

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

Icy is an open community platform for bioimage informatics

Fast trimming of sequencing reads

Course material for the part about R and RStudio of the PhD course.

library to visualize biological data: http://rplanel.pages.pasteur.fr/bioviz-js

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Repository for snakemake rules

Script Editor plugin for Icy

Provides 3D vector mathematics classes.