GitLab

Course material for the part about R and RStudio of the PhD course.

compress nd2 files

A module handling basic fonctionnality needed in django project such as base.html using bootstrap, account settings, preferences management, ...

SHAMAN is a SHiny application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization.

Asia-Pacific ICEMER cohort ran in Madang (Papua New-Guinea) in early 2020. The purpose of this repository is to centralize R scripts and developments to streamline the data extraction and analysis.

Extracting a nucleotide segment from a FASTA-formatted file

Translating and back-translating codon and amino-acid sequence files

Building a supermatrix of characters from a set of multiple sequence alignments

Material for Diderot 2020-2021

Fast distance-based phylogenetic inference from unaligned genome sequences

Fast greedy clustering of genomes based on minhash similarity

Deprojection of a 2D segmentation onto a 2.5D mesh

Local z-projection via the determination of a plane of reference.

Downloading genome assembly files from GenBank or RefSeq

Keeping R and Python specific snippets