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Icy is an open community platform for bioimage informatics
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iPPI-DB - django application
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Beamer (LaTeX) template really close to the official Pasteur pptx theme
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compress nd2 files
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Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.
I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.
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Genome de novo assembly from raw paired-end FASTQ files
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A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium
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HUB transcriptomic snakemake pipeline
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Beamer (LaTeX) template really close to the official Pasteur pptx theme
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static-pages playground for CI
pages configuration at https://gitlab.pasteur.fr/tru/static-pages/pages/
SSL is for *.pages.pasteur.fr (no need to do anything)
pages generated available at: https://tru.pages.pasteur.fr/static-pages/
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building an alpinelinux docker image for CI
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Intensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.
