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Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data
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Django based project to build metagenomics genes catalog
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Some helpers for HTS data analyses.
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Some wrappers for my snakemake HTS pipelines
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compress nd2 files
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Asia-Pacific ICEMER cohort ran in Madang (Papua New-Guinea) in early 2020. The purpose of this repository is to centralize R scripts and developments to streamline the data extraction and analysis.
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Docker for InterMine
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Course material for the part about R and RStudio of the PhD course.
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Serratus project, read downloader using AWS Batch
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A module handling basic fonctionnality needed in django project such as base.html using bootstrap, account settings, preferences management, ...
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SHAMAN is a SHiny application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization.
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