GitLab

Icy is an open community platform for bioimage informatics

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

SHAMAN is a SHiny application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization.

A plugin allowing to create a graphic showing the intensity profile of 2D ROIs

Utilities to collapse reads in bam files to their 5' end

Template to create new Icy plugin (POM file and base plugin class)

Parent POM for all Icy plugin projects

Some helpers for HTS data analyses.

Miscellaneous python things to deal with bam files

Some scripts to plot results from my HTS pipelines.

Some wrappers for my snakemake HTS pipelines