Icy is an open community platform for bioimage informatics

Backbone for automatic tagging backends; includes a Python implementation of PlanarLarvae.jl features and the Julia-Python communication layer

Interface between MaggotUBA and the Nyx tagging UI

No code here, only artefacts, mostly to feed the CI with data

Script to pre-process GWAS inputs

Comparaisons d'ensembles de trajectoires

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

2D viewer for behaving larvae, with manual and automatic behavior tagging capabilities

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

compress nd2 files

This library contains the functions to convert TensorFlow 1 tensors into Icy sequences and viceversa. This library is compatible with TensorFlow versions up to 1.15

The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime

SHAMAN is a SHiny application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization.