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Local z-projection via the determination of a plane of reference.

Java3D library for Icy

Cropping reads to reach homogeneous composition among positions

A simple plugin to randomly assign colors to ROIs in sequences. Also available for protocols

Multiple Sequence Alignment shrinking

Sequence blocks plugin for Icy. This plugin deliver a set of Sequence tools to be used with Protocols (Graphical Programming).

building prefix tree from LIN codes

imglib2-icy ImgLib2 wrappers for Icy.

MetroloSPIM plugin for Icy

Icy wrapper for the Apache Commons CSV library.

Compute the intensity profile of ROI contour along Z (3D) and T (timelaps) dimension. Generates a workbook document containing all the intensity values for each point of the contour, can be plotted as graph or exported as CSV

Blocks plugin for Icy. Also known as "Protocols SDK" This plugin provide interfaces to make plugin compatible with Protocols(Graphical Programming).

Manage a list of ROIs that the user can store and pop back in one click.