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Java3D library for Icy

Import Matlab *.mat files as sequences in Icy

Blocks plugin for Icy. Also known as "Protocols SDK" This plugin provide interfaces to make plugin compatible with Protocols(Graphical Programming).

ROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).

Spot Tracking plugin for Icy

QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.

Manage a list of ROIs that the user can store and pop back in one click.

Micro-Manager plugin for Icy

Blocks (Protocols) for Micro-Manager plugin

A plugin allowing to create a graphic showing the intensity profile of 2D ROIs

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Low-level functions for interactive communication between Icy and Matlab.