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Collection of R scripts and pipelines for the PvSTATEM project.

MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.

Code and data for the article "Integrating information from historical data into mechanistic models for influenza forecasting" by Alessio Andronico, Juliette Paireau and Simon Cauchemez

Course material for the part about R and RStudio of the PhD course.

LIANA: a LIgand-receptor ANalysis frAmework

Git repository to host The PvSeroTAT RShiny app. This app provides a user-friendly interface to apply classification algorithms to detect recent infections by Plasmodium vivax, as detailed in the recent paper by Longley et al. (https://doi.org/10.1038/s41591-020-0841-4)

Source of the shiny server that presents results obtained by large scale double mutant yeast screens (GIM): http://hub05.hosting.pasteur.fr/GIM_interactions/

Pipeline to run CMS in large-scale analyses

coGSEA with the SetRank Method

This repository contains public data and script related to our observation study of gender impact on asking behavior during JOBIM 2021.

MeRIP-Seq pipeline analysis for m6a methylation site detection Author: Christophe Bécavin, Hub Bioinformatic and Biostatistic, Institut Pasteur